BAC Information

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BAC

Clone NameB6Ng01-116P10
ChromosomeY (Build37)3 (Build37)
Map Location 1,983,087 - 1,983,13571,665,132 - 71,665,665
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116P10.bB6Ng01-116P10.g
ACCDH921829DH921830
length861525
definitionDH921829|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P10, 5' end.DH921830|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,983,087 - 1,983,135)(71,665,132 - 71,665,665)
sequence
gaattcttagacaaatggatggatctggagggtatcatcctgagtgaggt
aacccaatcacaaaagaacacatatgatatacacttactgataaacggat
attagcccagaaacttagaatatctaagatacaatttgaaaaaaaaaaac
aaaaacaaaaacaaaaaaacaaaaaaaacaaaaaacatgaaacttaagaa
gaaggaagatcaaagtgtggatagttcgttccttcttagaatggggaaca
aaatacccatgaaagaagttacagagacaaagtttggagcttagatggaa
ggaaggaccatctacagactgccccaccaggagattcatcccataaacaa
ccacaaaacacagacactattgcatatgccagcaagattatgctgacagg
accctgatgtagctatcccttgtgagactatgccgaggcctagcaaacac
agaagtggataatcacagtcatctattgaatggaacacagggccccaaat
gaaggagctagagaaagtaaccaagaagctgaaggggtctgcaaccctat
aagaggaacaacaatatgaactaagtagtacccctctccccgagagctca
tgtctctagtttcaaatgtagcagaggctggcctagctggccattaatgg
gaggagaggcccttggtcttgcaaagattttatgccccagtacaggggaa
tgccagggccaggaagcagggttaatttcagagaggaaagtatgaaaggg
gatagtatttgaattgtaagtgaagaaatacctaataaaaaattaaaaat
aagctatatatgaacattgaagagcaacaagtttttatggtaaatgtaaa
gccctgggtag
ctgtacaatccaaacttttatcatgaatgggtgttggatcttgttaaatg
ctttttctgcatctaacgagatgatcatgtggtttttgtctttgagtttg
tttatataatggattacattgatggattttcgtatattaaaccatccctg
catccctggaataaaacctacttggtcaggatggatgattgctttaatgt
gttcttggattcggttagcgagaattttattgaggattttttcatcgata
ttcataagagaaattggtctgatgttctctatctttgttggatctttctg
tggttaggtttcagagtaatagtggcttcttaatatgagtttggttgatt
accttctacttctattttgtgaaatagtttgtttcaattggaattagatc
ttttttgaaggtctgatagaactctgcactaaacccatctggtcctgggc
tttttttggttgggagactattaataactgcttctatttcttttggtgat
atgggactgtttagatggtcaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1983087_1983135
seq2: B6Ng01-116P10.b_171_217

seq1  AAAAAAAAAAACCCAGCAACAACAAAAACATACA---AAACAAAACAAAA  47
      |||||||||||     ||| |||||||||| | |   ||| |||||||||
seq2  AAAAAAAAAAA-----CAAAAACAAAAACAAAAAAACAAAAAAAACAAAA  45

seq1  AA  49
      ||
seq2  AA  47

seq1: chr3_71665132_71665665
seq2: B6Ng01-116P10.g_65_595 (reverse)

seq1  AAGTTGACCATCTAAACAGTCCCATATCACCAAAAGAAATAGAAGCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACCATCTAAACAGTCCCATATCACCAAAAGAAATAGAAGCAGTT  50

seq1  ATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGC  100

seq1  AGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAAC  150
      |||||||||||||||||||||| |||||||||||||||||    ||||||
seq2  AGAGTTCTATCAGACCTTCAAAAAAGATCTAATTCCAATT-GAAACAAAC  149

seq1  TATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAA  200
      ||||||||||||||||||||||||||| || ||| ||||||| ||| |||
seq2  TATTTCACAAAATAGAAGTAGAAGGTAATCAACCAAACTCATATTAAGAA  199

seq1  GCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGA  250
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  GCCACTATTACTCTGAAACCT-AACCACAGAAAGATCCAACAAAGATAGA  248

seq1  GAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATA  300
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAACATCAGACCAATTTCTCTTATGAATATCGATGAAAAAATCCTCAATA  298

seq1  AAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCT  348

seq1  GACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAA  398

seq1  ATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACA  448

seq1  TGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCA  500
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGATCATCTCGTTAGATGCAGAAAAAGCATTTAACAAGATCCAACACCCA  498

seq1  TTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  534
      ||||||||||||| ||||||  |  |||||||||
seq2  TTCATGATAAAAG-TTTGGATTGTACAGGAATTC  531