BAC Information

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BAC

Clone NameB6Ng01-118H11
ChromosomeY (Build37)17 (Build37)
Map Location 573,321 - 573,36388,895,071 - 88,896,301
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118H11.bB6Ng01-118H11.g
ACCDH922937DH922938
length5001,207
definitionDH922937|Mus musculus domesticus DNA, BAC clone: B6Ng01-118H11, 5' end.DH922938|Mus musculus domesticus DNA, BAC clone: B6Ng01-118H11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,363)(88,895,071 - 88,896,301)
sequence
gaattcttggacagatggatgtatctggaggatatcatccttagtgaggt
aacccaatcacaaaagaagtcattagatatgcactcactgataagtggat
attagcctagaaacatagaacacccaagatacaatttgcaaaacacaaga
aaatcaagaagagggaagatcaatgggtggatacttcattcctccttaga
atagggaacaaaatacccatgaaaggagttatagagacaaagtttggagc
tgagacaaaaggatggaccatctagagactaccccacccggagatccatt
ccataatcagccaccaaacccagacactattgcatatgccagcaagattt
tgctgaagggaccctgttatagctgtctcttatgaggctatgccagtgcc
tggcaaatacagaagtggatgctcacagtcatctataagatggaacacag
ggccccaatggaggagctagagaaagtacccaaggagctgaaggggtctg

gaattccctcaacagaaaagatgtggatatgcatctgagtaagaattttc
atcagttcagtgcatagaccactgattggtacctcattactggtaacgat
agcaggcaaagaggcctttccaatctctaaacacaacgtttagtttagaa
aattccaaataaaggagaataatgttctttcagttattaagataacacca
ttttaaaaatagccacaaataagccaagtttgtgacaaactattttggtt
gtgaatattaataaatcccctggatttcccaaggttttgttataagaaat
gaatattttaattatattaaacaaaagtctctggggaagatggaaatcca
tagagaactctgaggcctgtggctcagaaacagaaaatcaaatgatgtct
ttctttttacttcccctatccctaggaaagagcccaaaaagggaagagaa
aagcttgttccattggcttgatgaaagcaggcattaacgaacacagggaa
actcgtgtagctgtggttacctacctaggtagtcattcatttagttcttt
acctacccatccatttgccagcctaccaacctacctcccaacctacctac
caacctgcctacctcccaacctacctatcaacctaccaacctacctacct
acctaccaacctgcctacctacctacttatcaacctcccaacctgcctac
cttcctaccaacctacctaactaccaaccaacctaccaacctatgtaaat
ctttttgaggtttttattttccagaatctatgtggctcacttgagtcaat
catagggtctgtgtatttctggcctggttatgagtttcagtgttcaacta
cattaagacaatttaatgaccctagatgaaacagtgggcaaagttaaaga
aagcaatcgctgaactccatgttgactgtcacccgcatcaatctctgcac
cggctgattacagagaacttgcctacactttttatgactggggacttatt
cagtctgagtttcctagctgcaaacaggtagtgtagtagactacctgtga
ggtttctgacacagttctcatgatgttttttttgttgtttgttttttttt
ttttgagatggttccttacattaacacccaggttagccagaactaggcaa
tgcctcctggctcctcttttcagtgctatatgaagcttgcactacttttg
ctaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573363
seq2: B6Ng01-118H11.b_506_548

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTG  43
      |||||||||||||||||||||||||||||||| ||||| ||||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTG  43

seq1: chr17_88895071_88896301
seq2: B6Ng01-118H11.g_71_1277 (reverse)

seq1  AGCCTAGCAAAAAGTAGTGGCCCAAGCCTACAATTATAGCACTTGAAAAG  50
      |||||||| ||||||||||   |||| || ||  |||||||| |||||||
seq2  AGCCTAGC-AAAAGTAGTG---CAAG-CTTCA--TATAGCAC-TGAAAAG  42

seq1  AGGAGGCAGGA-GCATTGCCGTGAGTCTGGGGCTAACCTGGGCTGTATAA  99
      ||||| ||||| ||||||||   ||| |  |||||||||||| ||| |||
seq2  AGGAGCCAGGAGGCATTGCC--TAGT-TCTGGCTAACCTGGG-TGT-TAA  87

seq1  TGTAAGGGACCATCTCAAAAAAAAAAAAAAACAAACAAACAAAAAAAAAA  149
      ||||||| ||||||||  |||||||||||||||||||   | ||||||||
seq2  TGTAAGGAACCATCTC--AAAAAAAAAAAAACAAACA---ACAAAAAAAA  132

seq1  CATCATGAAGAACTGTGTCAGAGACCTCACAGGTAGTCTACTACACTACC  199
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CATCATG-AGAACTGTGTCAGAAACCTCACAGGTAGTCTACTACACTACC  181

seq1  TGTTTTGCAGCTAGGAAACTCAGACCTGAATAAGTCCCCAGTTCATTAAA  249
      || ||||||||||||||||||||| |||||||||||||||| ||| ||||
seq2  TG-TTTGCAGCTAGGAAACTCAGA-CTGAATAAGTCCCCAG-TCA-TAAA  227

seq1  AAGTGTAGGCAAGTTTCTCTGTAATCAGCCGGTGCAGAGATTGATGCGGG  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGGCAAG-TTCTCTGTAATCAGCCGGTGCAGAGATTGATGCGGG  276

seq1  TGACAGTCAACATGGAGTTCAGCGATTGCTTTCTTTAACTTTGCCCACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCAACATGGAGTTCAGCGATTGCTTTCTTTAACTTTGCCCACTG  326

seq1  TTTCATCTAGGGTCATTAAATTTGTCTTAATGTAGTTGAACACTGAAACT  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCATCTAGGGTCATTAAA-TTGTCTTAATGTAGTTGAACACTGAAACT  375

seq1  CATAACCAGGCCAGAAATACACAGACCCTATGATTGACTCAAGTGAGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCAGGCCAGAAATACACAGACCCTATGATTGACTCAAGTGAGCCA  425

seq1  CATAGATTCTGGAAAATAAAAACCTCAAAAAGATTTACATAGGTTGGTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTCTGGAAAATAAAAACCTCAAAAAGATTTACATAGGTTGGTAG  475

seq1  GTTGGTTGGTAGTTAGGTAGGTTGGTAGGAAGGTAGGCAGGTTGGGAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGGTAGTTAGGTAGGTTGGTAGGAAGGTAGGCAGGTTGGGAGGT  525

seq1  TGATAAGTAGGTAGGTAGGCAGGTTGGTAGGTAGGTAGGTAGGTTGGTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTAGGTAGGTAGGCAGGTTGGTAGGTAGGTAGGTAGGTTGGTAG  575

seq1  GTTGATAGGTAGGTTGGGAGGTAGGCAGGTTGGTAGGTAGGTTGGGAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAGGTAGGTTGGGAGGTAGGCAGGTTGGTAGGTAGGTTGGGAGGT  625

seq1  AGGTTGGTAGGCTGGCAAATGGATGGGTAGGTAAAGAACTAAATGAATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTAGGCTGGCAAATGGATGGGTAGGTAAAGAACTAAATGAATGA  675

seq1  CTACCTAGGTAGGTAACCACAGCTACACGAGTTTCCCTGTGTTCGTTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAGGTAGGTAACCACAGCTACACGAGTTTCCCTGTGTTCGTTAAT  725

seq1  GCCTGCTTTCATCAAGCCAATGGAACAAGCTTTTCTCTTCCCTTTTTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTTTCATCAAGCCAATGGAACAAGCTTTTCTCTTCCCTTTTTGGG  775

seq1  CTCTTTCCTAGGGATAGGGGAAGTAAAAAGAAAGACATCATTTGATTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTAGGGATAGGGGAAGTAAAAAGAAAGACATCATTTGATTTTC  825

seq1  TGTTTCTGAGCCACAGGCCTCAGAGTTCTCTATGGATTTCCATCTTCCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGAGCCACAGGCCTCAGAGTTCTCTATGGATTTCCATCTTCCCC  875

seq1  AGAGACTTTTGTTTAATATAATTAAAATATTCATTTCTTATAACAAAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTTTGTTTAATATAATTAAAATATTCATTTCTTATAACAAAACC  925

seq1  TTGGGAAATCCAGGGGATTTATTAATATTCACAACCAAAATAGTTTGTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATCCAGGGGATTTATTAATATTCACAACCAAAATAGTTTGTCA  975

seq1  CAAACTTGGCTTATTTGTGGCTATTTTTAAAATGGTGTTATCTTAATAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGGCTTATTTGTGGCTATTTTTAAAATGGTGTTATCTTAATAAC  1025

seq1  TGAAAGAACATTATTCTCCTTTATTTGGAATTTTCTAAACTAAACGTTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAACATTATTCTCCTTTATTTGGAATTTTCTAAACTAAACGTTGT  1075

seq1  GTTTAGAGATTGGAAAGGCCTCTTTGCCTGCTATCGTTACCAGTAATGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGATTGGAAAGGCCTCTTTGCCTGCTATCGTTACCAGTAATGAG  1125

seq1  GTACCAATCAGTGGTCTATGCACTGAACTGATGAAAATTCTTACTCAGAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAATCAGTGGTCTATGCACTGAACTGATGAAAATTCTTACTCAGAT  1175

seq1  GCATATCCACATCTTTTCTGTTGAGGGAATTC  1231
      ||||||||||||||||||||||||||||||||
seq2  GCATATCCACATCTTTTCTGTTGAGGGAATTC  1207