BAC Information

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BAC

Clone NameB6Ng01-121F12
ChromosomeY (Build37)9 (Build37)
Map Location 573,415 - 573,52479,154,899 - 79,156,014
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121F12.bB6Ng01-121F12.g
ACCDH925051DH925052
length4941,103
definitionDH925051|Mus musculus domesticus DNA, BAC clone: B6Ng01-121F12, 5' end.DH925052|Mus musculus domesticus DNA, BAC clone: B6Ng01-121F12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,415 - 573,524)(79,154,899 - 79,156,014)
sequence
tctggagtaaccaattatccaactgtcattatggggaggtaccaggctgt
taacacccaaaggaacttccttaaagaccaggaaagcatgtccctcaata
gaggaatggatacagaaaatgtggtacatttacacaatgaaatactactc
ggctgttaaaaacaatgacttcatgaaattcacaggcaaatggatggaac
tagaaaatatcatcttgagtgagataactcagtcacaaaagaacacacac
agcatgcactcactgataagtggatattagccccaaagtttggaataccc
aagattaaattcatagaccatatgaagcccaagaagaaagaagaccaaac
tgtggatgtttcagtgcttcttagaaggcgcttgtgtctctagctgcata
tgtagcaaaagatggcctagtaggccatcactgggaagagaggccacttg
gtattgcaaactttatatgccccattacaggggaatgccagggc
gaattcccccccaacaatgaacaattgattggaataagatttctttatga
ttagaacattatttcccctggctattacttattagaataggaacgaaagg
catgcaatgtgtagtctttgtagatatctcccaaataactacaaataaaa
ccaaggaaagagaaagaaataacaacacattatatcacagtttcatgtct
gttgacattttgttcattttgatggggtgagtatcaagccatcttcccat
tgttcggcagtgacataaggctctgtgctccacatggggcatggctaata
cacaataccaggccttattaatttgatcagtgcatgattcaatcatctcc
atctgtttaagagtattgttgaagtttatcttcatctttaagtcataatt
tccatttgtggaaataattgttcatttacttcttatctattgctacactc
gtcttaaaatgtgtgactagaaagccaaagagaatgtcagaggtttgcag
agtttggatgacatttatcagagttgatgtcaaggtgccccaaacaagga
gacctcctttcgcacaacccagagcattaggcctgctgccagcaagatga
acaccattactccatcaccaactacttcactcttggtccacattccctga
gtcatcttgtacattacatgtttttatatcactatcaagatcacaaaaag
agattcttcaaatttacactgaaaacttcaacgtgttaacatgtgcttcc
cctacacaaacttcaagtccatctgtatttttctggatacttttcccatg
tccctaggtattctgggaagcttcctttagtcccagtattgtagaagtcc
cactattgctggccacagctattcatcactcaagcacagcttctttgtaa
ggctggggaactaagaatagcatttttgattctagaaccctttgacactt
caggatgatatcactcaagggtggaaaatctgactgcttcaaactctaca
gtttttttttcttcaaaatcattcatttatgccatgtattttatcacatc
atctaccaccaagtcttctccctccttcagttgaccctattcatcgcctc
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573415_573524
seq2: B6Ng01-121F12.b_439_548

seq1  TGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGG  50
      |||||||||||||||||||| || ||||||||||||| |||||||| |||
seq2  TGTCTCTAGCTGCATATGTAGCAAAAGATGGCCTAGTAGGCCATCACTGG  50

seq1  GAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGA  100
      ||||||||||| |||||| ||||||||||||||||||||| |||||||||
seq2  GAAGAGAGGCCACTTGGTATTGCAAACTTTATATGCCCCATTACAGGGGA  100

seq1  ACACCAGGGC  110
      |  |||||||
seq2  ATGCCAGGGC  110

seq1: chr9_79154899_79156014
seq2: B6Ng01-121F12.g_67_1169

seq1  GAATTCCCCCCCAACAATGAACAATTGATTGGAATAAGATTTCTTTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCCCAACAATGAACAATTGATTGGAATAAGATTTCTTTATGA  50

seq1  TTAGAACATTATTTCCCCTGGCTATTACTTATTAGAATAGGAACGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACATTATTTCCCCTGGCTATTACTTATTAGAATAGGAACGAAAGG  100

seq1  CATGCAATGTGTAGTCTTTGTAGATATCTCCCAAATAACTACAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATGTGTAGTCTTTGTAGATATCTCCCAAATAACTACAAATAAAA  150

seq1  CCAAGGAAAGAGAAAGAAATAACAACACATTATATCACAGTTTCATGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAAGAGAAAGAAATAACAACACATTATATCACAGTTTCATGTCT  200

seq1  GTTGACATTTTGTTCATTTTGATGGGGTGAGTATCAAGCCATCTTCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATTTTGTTCATTTTGATGGGGTGAGTATCAAGCCATCTTCCCAT  250

seq1  TGTTCGGCAGTGACATAAGGCTCTGTGCTCCACATGGGGCATGGCTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGGCAGTGACATAAGGCTCTGTGCTCCACATGGGGCATGGCTAATA  300

seq1  CACAATACCAGGCCTTATTAATTTGATCAGTGCATGATTCAATCATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACCAGGCCTTATTAATTTGATCAGTGCATGATTCAATCATCTCC  350

seq1  ATCTGTTTAAGAGTATTGTTGAAGTTTATCTTCATCTTTAAGTCATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTAAGAGTATTGTTGAAGTTTATCTTCATCTTTAAGTCATAATT  400

seq1  TCCATTTGTGGAAATAATTGTTCATTTACTTCTTATCTATTGCTACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGTGGAAATAATTGTTCATTTACTTCTTATCTATTGCTACACTC  450

seq1  GTCTTAAAATGTGTGACTAGAAAGCCAAAGAGAATGTCAGAGGTTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAATGTGTGACTAGAAAGCCAAAGAGAATGTCAGAGGTTTGCAG  500

seq1  AGTTTGGATGACATTTATCAGAGTTGATGTCAAGGTGCCCCAAACAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGATGACATTTATCAGAGTTGATGTCAAGGTGCCCCAAACAAGGA  550

seq1  GACCTCCTTTCGCACAACCCAGAGCATTAGGCCTGCTGCCAGCAAGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCTTTCGCACAACCCAGAGCATTAGGCCTGCTGCCAGCAAGATGA  600

seq1  ACACCATTACTCCATCACCAACTACTTCACTCTTGGTCCACATTCCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTACTCCATCACCAACTACTTCACTCTTGGTCCACATTCCCTGA  650

seq1  GTCATCTTGTACATTACATGTTTTTATATCACTATCAAGATCACAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTGTACATTACATGTTTTTATATCACTATCAAGATCACAAAAAG  700

seq1  AGATTCTTCAAATTTACACTGAAAACTTCAACGTGTTAACATGTGCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTCAAATTTACACTGAAAACTTCAACGTGTTAACATGTGCTTCC  750

seq1  CCTACACAAACTTCAAGTCCATCTGTATTTTTCTGGATACTTTTCCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACAAACTTCAAGTCCATCTGTATTTTTCTGGATACTTTTCCCATG  800

seq1  TCCCTAGGTATTCTGGGAAGCTTCCTTTAGTCCCAGTATTGTAGAAGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGGTATTCTGGGAAGCTTCCTTTAGTCCCAGTATTGTAGAAGTCC  850

seq1  CACTATTGCTGGCCACAGCTATTCATCACTCAAGCACAGCTTCTTTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTGCTGGCCACAGCTATTCATCACTCAAGCACAGCTTCTTTGTAA  900

seq1  GGCTGGGGAACTAAGAAATAGCATTTTTGATTCTAGAACCCTTTGACACT  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAACTAAG-AATAGCATTTTTGATTCTAGAACCCTTTGACACT  949

seq1  TCAGGGATGATTATCACTCAAGGGTGGAAAATCTGACTGCTTCAAAACTC  1000
      ||| |||||| |||||||||||||||||||||||||||||||| ||||||
seq2  TCA-GGATGA-TATCACTCAAGGGTGGAAAATCTGACTGCTTC-AAACTC  996

seq1  TAACAGTTTTTTTTTCTTCAAAAAATTCATTCATTTATGCCATGTATTTT  1050
      | |||||||||||||||||||||   |||||||||||||||||||| |||
seq2  T-ACAGTTTTTTTTTCTTCAAAA---TCATTCATTTATGCCATGTA-TTT  1041

seq1  TATCACATCCATCTACCACCAAGTCCTTCTCACTCCTTCAGTTGACCCTA  1100
      |||||||| ||||||||||||||| |||||| ||||||||||||||||||
seq2  TATCACAT-CATCTACCACCAAGT-CTTCTCCCTCCTTCAGTTGACCCTA  1089

seq1  TTCAATCGCCTTCTAA  1116
      ||| |||||| |||||
seq2  TTC-ATCGCC-TCTAA  1103