BAC Information

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BAC

Clone NameB6Ng01-122G08
ChromosomeY (Build37)10 (Build37)
Map Location 1,544,818 - 1,544,84761,244,632 - 61,245,685
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122G08.bB6Ng01-122G08.g
ACCDH925833DH925834
length6651,036
definitionDH925833|Mus musculus domesticus DNA, BAC clone: B6Ng01-122G08, 5' end.DH925834|Mus musculus domesticus DNA, BAC clone: B6Ng01-122G08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,544,818 - 1,544,847)(61,244,632 - 61,245,685)
sequence
gaattcctcagtccctacctggcataccctgaacccaaccctgaactttc
caatccaggggctgggctgcccttcacacagaggctcttccatatataat
ccagacattttgcgctctctctctctctctctctctttctctctttcttt
ttcttcttcttctcctcttcctcctcctcctcttcctccctccctctctc
tccctttccctctctctctcagcaccccttctctttctcttccccctccc
ttctttccccaaggtgactccccagcctcaatccttgggactagtgaact
cacacgagagcaactttccaataaacctgcctttaatataatataatctg
ctttgaattggctcatttcactggtggagaaataacctatgatacagtag
caggcttccatatgtttttttagatggcctttagtatccccccattccct
tacaatttaatcctattccagttccccttctccccacccccaccccacca
taacactatattctatttcccctctcttgagaaatcctctcctctgctag
ttccttacaagatacctaacctctatggttattccgattaaaacatacat
attgaacacagaaaagctaacatccacatataagagaaaacatatttgtt
gttggggtctgggtt
gaattcacctccagcttccctagcaggaggtagagaaaacagggtttggt
tgtctcaggtggtagccagcagggggtccggggctcgctgtggcacagca
ggccataggcatcccacaagccctgtcgtcaaggcagaggaatatggata
gggtcagaatctttctggatccagaggtaagttcttttcatggagttctg
aaatagcagaaactgtgaatcatatctaaaggctaagaagagcggatcca
gagagggtaggacaaactggaggacaggaagacagtattttaagagggaa
tttggatgcaaggaaagagatcttgctgctatgagttattttattaagat
acaatttcctacagcgggattccaatatttgagttcctgcatttcaatat
ttctgaaaactccaaggcaccgtctacgggtcctggagttctgagcattt
acttgtgagagttctctctgtggtgaaaggaaccgctttcactctggcag
aaggagcgggctggggactaggcacagtttaatttgttttgagacgttaa
aagcaaagacattttactctgaataaggttttctctcccccccaaccccc
cactgaacagttttatttcaacataaacagacgctgaaccagggctgctg
ttctccataggattgatcgcgcctggggcctcctggggtgtatggcttct
tgctgtgatttcccctgaagccagctcacctggagaactgcttcagttgc
tccagtctgggcaacctgagcccagttcccaatgagtgcgtccactcttt
ggtttttttcactggcccctttcccactttcctcatcccagagaccacgg
cccaacgctgcagtaatggccaggcctaaatcaggccacccgtggctcat
ttgaagcccatgcacatcagtatgctgaactcgtgagaagagttcattgg
cgtttggtgccggggtggggtcgatgcccattggccattgttgaaggaca
tgatggcaggagctaaggcgccccatgatgaaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1544818_1544847
seq2: B6Ng01-122G08.b_161_190 (reverse)

seq1  AGAGAGAAAGAGAGAGAGAGAGAGAGAGAG  30
      ||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGAGAGAGAGAGAGAGAGAGAG  30

seq1: chr10_61244632_61245685
seq2: B6Ng01-122G08.g_67_1102

seq1  GAATTCACCTCCAGCTTCCCTAGCAGGAGGTAGAGAAAACAGGGTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCAGCTTCCCTAGCAGGAGGTAGAGAAAACAGGGTTTGGT  50

seq1  TGTCTCAGGTGGTAGCCAGCAGGGGGTCCGGGGCTCGCTGTGGCACAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGGTGGTAGCCAGCAGGGGGTCCGGGGCTCGCTGTGGCACAGCA  100

seq1  GGCCATAGGCATCCCACAAGCCCTGTCGTCAAGGCAGAGGAATATGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGGCATCCCACAAGCCCTGTCGTCAAGGCAGAGGAATATGGATA  150

seq1  GGGTCAGAATCTTTCTGGATCCAGAGGTAAGTTCTTTTCATGGAGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAATCTTTCTGGATCCAGAGGTAAGTTCTTTTCATGGAGTTCTG  200

seq1  AAATAGCAGAAACTGTGAATCATATCTAAAGGCTAAGAAGAGCGGATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAGAAACTGTGAATCATATCTAAAGGCTAAGAAGAGCGGATCCA  250

seq1  GAGAGGGTAGGACAAACTGGAGGACAGGAAGACAGTATTTTAAGAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTAGGACAAACTGGAGGACAGGAAGACAGTATTTTAAGAGGGAA  300

seq1  TTTGGATGCAAGGAAAGAGATCTTGCTGCTATGAGTTATTTTATTAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGCAAGGAAAGAGATCTTGCTGCTATGAGTTATTTTATTAAGAT  350

seq1  ACAATTTCCTACAGCGGGATTCCAATATTTGAGTTCCTGCATTTCAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCCTACAGCGGGATTCCAATATTTGAGTTCCTGCATTTCAATAT  400

seq1  TTCTGAAAACTCCAAGGCACCGTCTACGGGTCCTGGAGTTCTGAGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAACTCCAAGGCACCGTCTACGGGTCCTGGAGTTCTGAGCATTT  450

seq1  ACTTGTGAGAGTTCTCTCTGTGGTGAAAGGAACCGCTTTCACTCTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAGAGTTCTCTCTGTGGTGAAAGGAACCGCTTTCACTCTGGCAG  500

seq1  AAGGAGCGGGCTGGGGACTAGGCACAGTTTAATTTGTTTTGAGACGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCGGGCTGGGGACTAGGCACAGTTTAATTTGTTTTGAGACGTTAA  550

seq1  AAGCAAAGACATTTTACTCTGAATAAGGTTTTCTCTCCCCCCCAACCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGACATTTTACTCTGAATAAGGTTTTCTCTCCCCCCCAACCCCC  600

seq1  CACTGAACAGTTTTATTTCAACATAAACAGACGCTGAACCAGGGCTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACAGTTTTATTTCAACATAAACAGACGCTGAACCAGGGCTGCTG  650

seq1  TTCTCCATAGGATTGATCGCGCCTGGGGCCTCCTGGGGTGTATGGCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATAGGATTGATCGCGCCTGGGGCCTCCTGGGGTGTATGGCTTCT  700

seq1  TGCTGTGATTTCCCCTGAAGCCAGCTCACCTGGAGAACTGCTTCAGTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGATTTCCCCTGAAGCCAGCTCACCTGGAGAACTGCTTCAGTTGC  750

seq1  TCCAGTCTGGGCAACCTGAGCCCAGTTCCCAATGAGTGCGTCCACTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTGGGCAACCTGAGCCCAGTTCCCAATGAGTGCGTCCACTCTTT  800

seq1  GGTTTTTTTCACTGGCCCCTTTCCCACTTTCCTCATCCCAAGAGAACCAC  850
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  GGTTTTTTTCACTGGCCCCTTTCCCACTTTCCTCATCCC-AGAG-ACCAC  848

seq1  GGCCCAAACGCTGCAGTAATGGCCAGGCCTAAATCAGGCCCACCCGTGGC  900
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCCC-AACGCTGCAGTAATGGCCAGGCCTAAATCAGG-CCACCCGTGGC  896

seq1  TCATTTGAAGCCCAGGCACCATCAGTAATGCTGAACTCGTGAAGAAGGAG  950
      |||||||||||||| ||| ||||||| |||||||||||||| |||||   
seq2  TCATTTGAAGCCCATGCA-CATCAGT-ATGCTGAACTCGTG-AGAAG--A  941

seq1  GTTCAATTGGCGTTTGGTGGCGGGGGTGGGGTTCGATGCCCCTTTGGCCA  1000
      |||| ||||||||||||| || ||||||||| |||||| ||| |||||||
seq2  GTTC-ATTGGCGTTTGGT-GCCGGGGTGGGG-TCGATG-CCCATTGGCCA  987

seq1  TTGTTGAGAGGAACAAAGAGGGCAGGAGCTAAGGGCGCCCCCATGAGGAA  1050
      ||||||| ||||   | || |||||||||||| |||| |||||||| |||
seq2  TTGTTGA-AGGA--CATGATGGCAGGAGCTAA-GGCG-CCCCATGATGAA  1032

seq1  AGGC  1054
      ||||
seq2  AGGC  1036