BAC Information

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BAC

Clone NameB6Ng01-122P16
ChromosomeY (Build37)2 (Build37)
Map Location 573,321 - 573,357150,080,768 - 150,081,194
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122P16.bB6Ng01-122P16.g
ACCDH926268DH926269
length982940
definitionDH926268|Mus musculus domesticus DNA, BAC clone: B6Ng01-122P16, 5' end.DH926269|Mus musculus domesticus DNA, BAC clone: B6Ng01-122P16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,357)(150,080,768 - 150,081,194)
sequence
gaattcttaggtacatggatgcatctggaggatatcatcctgagtgagat
aatccaatcacaaaaaaaatacatgatatgcactcactgaaaagcagata
ttagcccagaaacttagaatatccaagatataatttgcaaagcatgcaaa
acacaaaaagaaggaagacccaagtgtggatacttagatcgttcttagaa
ggaggtacaaaatatccatggaaggagttacagagacaaagtttggagct
gagactgaaggaaggaccatccagagactgccccacccggggatccatcc
ccaaaacaaccaccacacccagagactattgcagatgtcaacaagagttt
gctggcaggaccctaatacagctgtcctctgtgaggatatgccagtgcct
agcaaatacagaagtggatgttcacagtcatcaattggatggagcacaga
gtccccaatgaaggagctagagaaagcacccaaggagctgaaggagtctg
cagccctataggaggaacaacaatatgaactaaccagtaaccccagagct
ccctgggactaaaccaccagtcaaagaaaacaaggttgtactcatgtctc
tacctgtatatgttacagtgatggcctagtcggccatcaatgggaggaga
ggcccttggtcttgcaaagggtctatgccccaacatagaggaatgccagg
tccaggaagagggagtgggtggcttggggagcaggcggagggggaaggga
atacgggattttcggagaagaaaataagaaaggggatagcatttgaaatg
taagtgaagaaaatatctaataaaaaatatatttaaaaatgtaaagaaag
aatagggtagatagataaacaaagtttctcaactgaggattcttgaatgg
ctgagaagcacctaaagaaatgacattcttagtcataagggaaatgcaaa
tagatcaaactcctgtaacagcagatgctggt
gaattcatactggagagaaaccttacaaatgcagtgagtgtgacaaatgc
tttacccaaccatcccatcttagttttcatcgtagaattcattcaggaga
gaaaccttacaaatgtagtgaatgcgacaaatgctttactgacaaattca
ttctgggaaagcatcagagaattcatacaggaaagaaaccttacaaatgc
agtgagtgtgacaaatgctttactgacaaaggctatctgagagttcatca
gagaattcatactggagagaaaccttacaaatgcagtgagtgtgacaaat
gctttactgacaaaggctatctgagagttcatcagagaattcatactgga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttacccaacaatc
ccatcttagtattcatcagagaattcatacaggagagaaaccttacaaat
gtagtgaatgcgacaaatgctttactgacaaattcattctgggaaagcat
cagagaattcatacaggaaagaaaccttacaaatgcagtgagtgtgacaa
atgctttactgacaaattcactctgagaaagcatcagagaattcatacag
gagagaaaccttacaaatgtaatgaatgtgacaaatgctttactgacaaa
ggctatctgagagttcatcagagaattcatactggagagaaaccttacaa
atgcagtgagtgtgacaaatgctttacccaaccatcccatcttagtattc
attgtagaattcattcaggagagaaaccttacaaatgcagtgagtgtgac
aaatgctttaaccaaccatcccatcttagtattcatcgtagaattcattc
agagagaaaccttacaaatgtagtgaatgcgacaaatgctttactgacaa
attcactctgagaagcatcagatatttcatacaggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573357
seq2: B6Ng01-122P16.b_506_542

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGG  37
      ||| ||||||||||||||| |||||||||||| ||||
seq2  ATGAAGGAGCTAGAGAAAGCACCCAAGGAGCTGAAGG  37

seq1: chr2_150080768_150081194
seq2: B6Ng01-122P16.g_69_342 (reverse)

seq1  GGTTTCTCTCCAGTATGTGTTCTTTTATGTTTTTGAAGATAACTGTGATA  50
      |||||||||||||||||  |||| | |||   |   ||||| |  |  | 
seq2  GGTTTCTCTCCAGTATGAATTCTCTGATGAACTCTCAGATAGCCTTTGTC  50

seq1  TATAAAGGTTTTACCACATTGATTACATTCATAAGGTTTTTCTCCTGTTT  100
        |||||  |||  |||| | | | ||||  |||||||| | |||||| |
seq2  AGTAAAGCATTTGTCACACTCACTGCATTTGTAAGGTTTCTTTCCTGTAT  100

seq1  GTGTTCTTTTA---TATCGTAG-TCCACTTTGACATCCAAGGACTTTAAT  146
      |  |||| | |   | ||  ||    | |||| ||   ||| | |||   
seq2  GAATTCTCTGATGCTTTCCCAGAATGAATTTGTCAGTAAAGCA-TTTGTC  149

seq1  ACTTTGATTACACTCATGAGTTTTCTCTCCTGTATGTATTCGTTTATGCA  196
       | || | |||| |  | || ||||||||||| ||| ||||   || |  
seq2  GCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAATTC---TACG--  194

seq1  TTTGGAGTCCACCTTGACAT------GCAAAAGTTTTACCACATTGATTA  240
        || |  | |   ||  ||      | |||   |||  |||| | | | 
seq2  -ATGAAAACTAAGATGGGATGGTTGGGTAAAGCATTTGTCACACTCACTG  243

seq1  CATTCATAAGGTTTCTCTCCTTTATGCCTTTGGAGAGACCTGTGAGATAC  290
      ||||  ||||||||||||||  ||||  ||                    
seq2  CATTTGTAAGGTTTCTCTCCAGTATGAATTC-------------------  274

seq1  AAAGTCTCTACCACATTGGTTACACTCATAGGATTTCACTCCAGCAAGTG  340
                                                        
seq2  --------------------------------------------------  274

seq1  TTGTTTTATGTATCTGGAGACTACTGTTATATGCAAAGGCTTCACAATGT  390
                                                        
seq2  --------------------------------------------------  274

seq1  TGGACACCTCCATAGGGTTTCTCTCCAGTATGAATTC  427
                                           
seq2  -------------------------------------  274