BAC Information

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BAC

Clone NameB6Ng01-126L06
ChromosomeY (Build37)1 (Build37)
Map Location 573,321 - 573,36353,777,211 - 53,777,956
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126L06.bB6Ng01-126L06.g
ACCDH929002DH929003
length441883
definitionDH929002|Mus musculus domesticus DNA, BAC clone: B6Ng01-126L06, 5' end.DH929003|Mus musculus domesticus DNA, BAC clone: B6Ng01-126L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,363)(53,777,211 - 53,777,956)
sequence
gaattcataaatttcttagacaaatggatggatttggcggatattatctt
gaatgaggtaacccattcgcaaaagaacacatatgatatgcactcactga
taagtgaatactagcccagaagctcagaatccttcctagtattgggaaca
aaatacccatggaaggagttacacagactaagttcagagcagagagtgga
ggaatgactatccagagactgccccacttggggatccatcccataaacaa
ccacaaaaaccagaaactatggcagatgccaacaagagcctgccaacatg
agcctgatatagctgtctcctgagggcctctgccagtacctggcaaatat
agaagtggatgtttacaatcatccattggatggagcacaaggtccccaat
gaaggagctagagaaagtacccaaagagctgaaggggtctg
gaattctttttggttttctcctttttgttgatttgtactaattttattat
gacagggtctgatatgagtttgtgtaatatcatctggctttatagtgatc
agtcttcttgggtgatatacatcctccaatctgaaaggtattgggaatgg
gattgcatctaaaatctctttctctgaatctttgttggtggtgtatagaa
atctattgaaatgtgggcattgattctgcatcctgccatattactgaatt
tattgtttctagaattctgacagatttgggggatatttaacgagcaatac
catgccatccaccaataaggaattttttaacttattttcctatctgtatc
cctttaaatttccttctcttgttttactctgcaagctagtgcttccagca
caatgttgagaaggagtccccactgtctcatagcagatagtcctgactca
ttcctggcttcagtgagatagctccaagacttttttccgaatttgggatg
ttgttggctgtggatttctcatatagagattttattatgtttgggcatgt
tcactttaaacctatattctataggacttttatcatgaaggtaggttgga
atttgccaaagggtttttttttcttcatctattaagattgtcacatgatc
tttgaaagcctttgaccagtatttccttgaatctttgtctgatccaatgt
tcccactatttaagatcgtttgaatgcttgtgtctcacaggtcactgcta
tggacagacctcagttgggcccttgatccacagaaaactcaggtcctgtt
aaaggtggacaggactcagcaaaaagggtgacaaacagacacagacaaaa
gggaatgtggaatctgaatgtaattttcaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573363
seq2: B6Ng01-126L06.b_447_489

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTG  43
      ||| |||||||||||||||||||||| ||||| ||||| ||||
seq2  ATGAAGGAGCTAGAGAAAGTACCCAAAGAGCTGAAGGGGTCTG  43

seq1: chr1_53777211_53777956
seq2: B6Ng01-126L06.g_71_815

seq1  GAATTCTTTTTGGTTTTCTCCTTTTGGTTGATTTGTACTAATTTTATTAT  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATTCTTTTTGGTTTTCTCCTTTTTGTTGATTTGTACTAATTTTATTAT  50

seq1  GTCAGGGTCTGATATGAGTTTGTGTAATATCATCTGACTTTATAGTGATC  100
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACAGGGTCTGATATGAGTTTGTGTAATATCATCTGGCTTTATAGTGATC  100

seq1  ATTTCTTCTTGGGTGATATACATCCTCCAATCTGAAAGCTATTGGGAATG  150
      |  ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  A-GTCTTCTTGGGTGATATACATCCTCCAATCTGAAAGGTATTGGGAATG  149

seq1  GGATTGCATCTAAAATCTCTTTCTCTGTATCTTTGTTGGTGGTGTATAGA  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGATTGCATCTAAAATCTCTTTCTCTGAATCTTTGTTGGTGGTGTATAGA  199

seq1  AATCTATCGATTAGTGGACATTGATTCTGCATCCTGCCATATTACTGAAT  250
      ||||||| ||   |||| ||||||||||||||||||||||||||||||||
seq2  AATCTATTGAAATGTGGGCATTGATTCTGCATCCTGCCATATTACTGAAT  249

seq1  TTATTGTTTCTAGAATTCTGACAAATTTGGGGGATCCTTAATGAGCAATA  300
      ||||||||||||||||||||||| |||||||||||  |||| ||||||||
seq2  TTATTGTTTCTAGAATTCTGACAGATTTGGGGGATATTTAACGAGCAATA  299

seq1  TCATGTCATCCACCAATAAGGATTTTTTTAAACTTATTTTCTTATCTGTA  350
       |||| |||||||||||||||| |||||| ||||||||||| ||||||||
seq2  CCATGCCATCCACCAATAAGGAATTTTTT-AACTTATTTTCCTATCTGTA  348

seq1  TCCCTTTAAATTTCCTTCTCTTGTCTTACTATGCCAGCTTGTGCTTCCAG  400
      |||||||||||||||||||||||| ||||| ||| |||| ||||||||||
seq2  TCCCTTTAAATTTCCTTCTCTTGTTTTACTCTGCAAGCTAGTGCTTCCAG  398

seq1  CACAATGTTGAGAAGGAGT--------GGGGATAGCAGACAGTCCTGACT  442
      |||||||||||||||||||            |||||||| ||||||||||
seq2  CACAATGTTGAGAAGGAGTCCCCACTGTCTCATAGCAGATAGTCCTGACT  448

seq1  CATTCCTGGCTTCAGTGAGATTGCTCCAAGATTTTTATTCCCAATTTGGG  492
      ||||||||||||||||||||| ||||||||| |||| |||| ||||||||
seq2  CATTCCTGGCTTCAGTGAGATAGCTCCAAGACTTTT-TTCCGAATTTGGG  497

seq1  ATGTTGTTGGCTGTGGATTTCTTATATAGAGATTTTATTAGGTTGCGGTA  542
      |||||||||||||||||||||| ||||||||||||||||| |||  || |
seq2  ATGTTGTTGGCTGTGGATTTCTCATATAGAGATTTTATTATGTTTGGGCA  547

seq1  TGTTCTCTTTAGCCCTACATTCTGTAGGACTTTTATCATGAAGGTAGATT  592
      ||||| |||||  |||| ||||| ||||||||||||||||||||||| ||
seq2  TGTTCACTTTAAACCTATATTCTATAGGACTTTTATCATGAAGGTAGGTT  597

seq1  GGAATTTGCCAAAGGGTTTTTGTTTTTTTCTTCATCTATTAAGATTGTCA  642
      ||||||||||||||||||    ||||||||||||||||||||||||||||
seq2  GGAATTTGCCAAAGGGTT----TTTTTTTCTTCATCTATTAAGATTGTCA  643

seq1  CATGATCTTTGAAAGCCTTTGACCGGTATTTCCTTGAATCTTTATCTGAT  692
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  CATGATCTTTGAAAGCCTTTGACCAGTATTTCCTTGAATCTTTGTCTGAT  693

seq1  CCAACGTGTTCCTACTATTTACGGTAGTTTGACTGCTTGTGTCTCACAGG  742
      ||||  |||||| |||||||| | | |||||| |||||||||||||||||
seq2  CCAA--TGTTCCCACTATTTAAGATCGTTTGAATGCTTGTGTCTCACAGG  741

seq1  TCAC  746
      ||||
seq2  TCAC  745