BAC Information

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BAC

Clone NameB6Ng01-127J08
ChromosomeY (Build37)6 (Build37)
Map Location 1,120,840 - 1,120,988130,351,945 - 130,352,886
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127J08.bB6Ng01-127J08.g
ACCDH929663DH929664
length925939
definitionDH929663|Mus musculus domesticus DNA, BAC clone: B6Ng01-127J08, 5' end.DH929664|Mus musculus domesticus DNA, BAC clone: B6Ng01-127J08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,840 - 1,120,988)(130,351,945 - 130,352,886)
sequence
gaattctttgtttagctctgagccccattttttaatggggttattggatt
ttctggagtccaacttctttttttttaatgttttcttttttctgtatttt
ttattggatatttctttcaattacatttccagtgctatcccaaaagttcc
ctacacgctcccccacgaactcccctacccacccactcccacttcttggc
cctgccgttcccctgtactgaggcatataaattttgctcgaccaatgggc
ctccctttccactgatggacgaccaggccatcttctgattcataagcagc
tagaaacacgagcccaaggggggtggggtaattggttagttcatattgtt
gttccacctataggattgcagatcccttcagctccttgagtactttccct
agctcctccattgggggccctgtgatccatccaatagctgactgtgagca
tccacatctgtgtttgtcagtccccggcatagtctcacaagagacatcca
tatctgggtccttttagcaaaatctttctagtgtatgcaatggtatcagg
gtttagaagtgattatgggatggatccccggatatggcagtctctagatg
gtccatcttttcgtctcagctccaaactctgtctctgtaactccttccat
gtgtgttttgttcataattctaagaaagggcatgtgtccacactttggtc
ttcgttcttcttgagtttcatgcgtttggcaaattgttatctttacatct
tgggtattctaaatttctgggctaaaatccacttatcagtgagtacatat
tgtgcaagttcttttgtgattgggttacctcacgcaggataatgccctcc
agtccaaccatttgcctaagaatttcataaattcattcttttaaagctga
atagtactccattgtgtaaaagtcc
gaattccataagaatagacttacttcaagaacaggttgaaaaattgtata
aagttgtccaaatatctcttaaaggtttgtgtattacccctctacaagct
aatttctctcagtctcttgaacagagtcaccttttatctgagtatcttaa
agaaaattggtcgactaaagctgagcagttgtccagaaagctgctccccc
agattgccaaactcaacggctcttgactagaccccatcaccttgggggac
ttcacctcctggatcaccaatgccttctcattttttaaggaatgggaagg
aatgttggtctggggggcagtggtcctcctgggttgtgtcttttgtatct
ggctattgtgtcgactcaaacgagagcacgctcagcataaggcagtggtg
taccaagcattgatggtgattgaagatggcacaactcccaaagtttggct
ggcctctttaaaaaattaagagttcaccctaggtcgtctggcagttgtag
tcacacagatccacaggatccagtgacaggcaactttccttatgcacaga
ccaacctaagacatggggcatggaggctatagggtaaccctatgacgggt
aaaggctgtgacatgaaagtatcgacctaagacaggagccgtggcctatg
gacagacttgcccagacctagtccagcatcatattattaaacaaaaaagg
gggagatgtaggcagccaacgcctaaaagatagtgctggtttctggtgca
ccgtggccataaacaccttactgcgcctgccgctagtcaccactggcaca
acccctcccaagtggggggcatgctaatgaagttgtcgacaggcgaccat
cccaggggaaccataggcctcccaagtcttgggggtgtataaagcagtcc
tcccttgggttccggggtggccgtagagcatcaaggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120840_1120988
seq2: B6Ng01-127J08.b_394_542

seq1  GTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTC  50
      ||||||||||||||||| ||| ||||||||| |||||||||  |||||||
seq2  GTTGTTCCACCTATAGGATTGCAGATCCCTTCAGCTCCTTGAGTACTTTC  50

seq1  TCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGA  100
       ||||||||||||||||| ||||| ||||||||||| |||||||||||||
seq2  CCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGA  100

seq1  GCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACA  149
      |||||||| ||||||||||   | |||||||||||||||||||||||||
seq2  GCATCCACATCTGTGTTTGTCAGTCCCCGGCATAGTCTCACAAGAGACA  149

seq1: chr6_130351945_130352886
seq2: B6Ng01-127J08.g_65_1003

seq1  GAATTCCATAAGAATAGACTTACTTCAAGAACAGGTTGAAAAATTGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGAATAGACTTACTTCAAGAACAGGTTGAAAAATTGTATA  50

seq1  AAGTTGTCCAAATATCTCTTAAAGGTTTGTGTATTACCCCTCTACAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCAAATATCTCTTAAAGGTTTGTGTATTACCCCTCTACAAGCT  100

seq1  AATTTCTCTCAGTCTCTTGAACAGAGTCACCTTTTATCTGAGTATCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCTCAGTCTCTTGAACAGAGTCACCTTTTATCTGAGTATCTTAA  150

seq1  AGAAAATTGGTCGACTAAAGCTGAGCAGTTGTCCAGAAAGCTGCTCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGGTCGACTAAAGCTGAGCAGTTGTCCAGAAAGCTGCTCCCCC  200

seq1  AGATTGCCAAACTCAACGGCTCTTGACTAGACCCCATCACCTTGGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCAAACTCAACGGCTCTTGACTAGACCCCATCACCTTGGGGGAC  250

seq1  TTCACCTCCTGGATCACCAATGCCTTCTCATTTTTTAAGGAATGGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCCTGGATCACCAATGCCTTCTCATTTTTTAAGGAATGGGAAGG  300

seq1  AATGTTGGTCTGGGGGGCAGTGGTCCTCCTGGGTTGTGTCTTTTGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGTCTGGGGGGCAGTGGTCCTCCTGGGTTGTGTCTTTTGTATCT  350

seq1  GGCTATTGTGTCGACTCAAACGAGAGCACGCTCAGCATAAGGCAGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTGTGTCGACTCAAACGAGAGCACGCTCAGCATAAGGCAGTGGTG  400

seq1  TACCAAGCATTGATGGTGATTGAAGATGGCACAACTCCCAAAGTTTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCATTGATGGTGATTGAAGATGGCACAACTCCCAAAGTTTGGCT  450

seq1  GGCCTCTTTAAAAAATTAAGAGTTCACCCTAGGTCGTCTGGCAGTTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTTAAAAAATTAAGAGTTCACCCTAGGTCGTCTGGCAGTTGTAG  500

seq1  TCACACAGATCCACAGGATCCAGTGACAGGCAACTTTCCTTATGCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGATCCACAGGATCCAGTGACAGGCAACTTTCCTTATGCACAGA  550

seq1  CCAACCTAAGACATGGGGCATGGAGGCTATAGGGTAACCCTATGACGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTAAGACATGGGGCATGGAGGCTATAGGGTAACCCTATGACGGGT  600

seq1  -AAGGCTGTGACATGAAAGTATCGACCTAAGACAGGAGCCGTGGCCTATG  649
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGTGACATGAAAGTATCGACCTAAGACAGGAGCCGTGGCCTATG  650

seq1  GACAGACTTGCCCAGACCTAGTCCAGCATCATATTATTAAACAAAAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTTGCCCAGACCTAGTCCAGCATCATATTATTAAACAAAAAAGG  700

seq1  GGGAGATGTAGGCAGCCAACGCCTAAAAGATAGTGCTGGTTTCTGGTGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGTAGGCAGCCAACGCCTAAAAGATAGTGCTGGTTTCTGGTGCA  750

seq1  CCGTGGCCATAAACAACCTTACTGCGCCTG-CGCTAGTCACCACTTGGCA  798
      |||||||||||||| ||||||||||||||| ||||||||||||| |||||
seq2  CCGTGGCCATAAAC-ACCTTACTGCGCCTGCCGCTAGTCACCAC-TGGCA  798

seq1  CCAACCCCTCCCAAGT-GGGTGCATGCTAATGAAG-TGTCGACAGGCCGA  846
       ||||||||||||||| ||| |||||||||||||| |||||||||| |||
seq2  -CAACCCCTCCCAAGTGGGGGGCATGCTAATGAAGTTGTCGACAGG-CGA  846

seq1  CCAATCCCAGGGGGACACATAGCCCTCCCCAGTCCT-GGGGTGTATATAA  895
      || |||||||||| || ||||| |||||| |||| | |||||||||| ||
seq2  CC-ATCCCAGGGGAAC-CATAGGCCTCCCAAGTCTTGGGGGTGTATA-AA  893

seq1  GCAGTCCTCCCTGGGTTCCCGGGGTGCCCGTAGCAGCATCGAGGCAT  942
      |||||||||||| || | |||||||| |||||| |||||| ||||||
seq2  GCAGTCCTCCCTTGGGTTCCGGGGTGGCCGTAG-AGCATCAAGGCAT  939