BAC Information

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BAC

Clone NameB6Ng01-127J15
Chromosome7 (Build37)Y (Build37)
Map Location 148,355,881 - 148,356,6711,870,395 - 1,870,483
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1
Downstream geneLOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127J15.bB6Ng01-127J15.g
ACCDH929675DH929676
length870500
definitionDH929675|Mus musculus domesticus DNA, BAC clone: B6Ng01-127J15, 5' end.DH929676|Mus musculus domesticus DNA, BAC clone: B6Ng01-127J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(148,355,881 - 148,356,671)(1,870,395 - 1,870,483)
sequence
gaattcctgaaaagaagctgtatctacagagactggctgattagagtttc
agtgctgtggagaaattgggctggtgcagttccagaggctgccttatcct
gggctagttctacccctctagaacagctcttccttgcctacctgtgttgc
aactaatatcttgtgatcaggctggcctacaactcacagagatgtggctt
cctcttccccctgactgctggtaggaaaggcaagtgtcaccacacccagc
atccttttggaatcctttagcagaccagtagcttccactaaccaaaagcc
aagaatgtcatcagttggcatcttggacttacagaaaagcttccttcctc
ttgttgtaccaatctctctgatgtacccttcaatgtacttaaacttgcct
tgtttactactattttcttctgtaaaactacaaaacgtcatgaaactacc
tccatgggaacacagaatctggagtaacctaaatctgtgttctcaggcca
tggtcactaacaatgactccagaataaactatctcttattccttttaagg
tgagagctgtagttgttttcatggatactgagtacccacagacaaatggc
aggggctaccaacttaggagcctgggttcaggcaagccatgtggctggca
ggtacaatgagtttctagcaccataccaggacctcagaacaaactaaaga
caagcacctgccttccttctaccagcatgaaagtgagctttctacaaaga
ccacacccagtgaggaagggtgagaagtgaagggggcaagggcccctggg
tgctgagtttgcacaaactttcctggaagctgtatgggagaaactcatgt
gggtgggttgggtaggtggg
gaattcctttgacagagtactagcacagcacaacactggtgaggccccaa
gggccactcctagcaccctgtaaaactaggccatgttgccacactcctgt
aataccagtaccccagaggtactggcaggaagatgtgaagttcaaggtta
tcctaagctatgtaacaaattcctggccagcctggggtatatgagacctt
gtctcaaaaatgcaaagcaaagaagtcccaagctgccaaacccctcctcc
caaactgcaaacagagctggtcttggtggctcagatttgcaatctctgct
gttgagggtccaggccaacttgggctacatagtgagatcaaaggcaacgt
gagctaaatactccgtctccccaaaaaaaacaaaaagaaacaattcctaa
taacaaaaccaaacaacaatatgaactaaccagtaccccagagctcttta
ctctagctgcatatgtatcaaaagacggcctagtcggccatcactgcaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148355881_148356671
seq2: B6Ng01-127J15.b_125_917

seq1  AGTTCCAGAGGCTGCCTTATCCTGGGCTAGTTCTACCCCTCTAGAACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGAGGCTGCCTTATCCTGGGCTAGTTCTACCCCTCTAGAACAGC  50

seq1  TCTTCCTTGCCTACCTGTGTTGCAACTAATATCTTGTGATCAGGCTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTGCCTACCTGTGTTGCAACTAATATCTTGTGATCAGGCTGGCC  100

seq1  TACAACTCACAGAGATGTGGCTTCCTCTTCCCCCTGACTGCTGGTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTCACAGAGATGTGGCTTCCTCTTCCCCCTGACTGCTGGTAGGAA  150

seq1  AGGCAAGTGTCACCACACCCAGCATCCTTTTGGAATCCTTTAGCAGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTGTCACCACACCCAGCATCCTTTTGGAATCCTTTAGCAGACCA  200

seq1  GTAGCTTCCACTAACCAAAAGCCAAGAATGTCATCAGTTGGCATCTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTCCACTAACCAAAAGCCAAGAATGTCATCAGTTGGCATCTTGGA  250

seq1  CTTACAGAAAAGCTTCCTTCCTCTTGTTGTACCAATCTCTCTGATGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAAAAGCTTCCTTCCTCTTGTTGTACCAATCTCTCTGATGTACC  300

seq1  CTTCAATGTACTTAAACTTGCCTTGTTTACTACTATTTTCTTCTGTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGTACTTAAACTTGCCTTGTTTACTACTATTTTCTTCTGTAAAA  350

seq1  CTACAAAACGTCATGAAACTACCTCCATGGGAACACAGAATCTGGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAACGTCATGAAACTACCTCCATGGGAACACAGAATCTGGAGTAA  400

seq1  CCTAAATCTGTGTTCTCAGGCCATGGTCACTAACAATGACTCCAGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCTGTGTTCTCAGGCCATGGTCACTAACAATGACTCCAGAATAA  450

seq1  ACTATCTCTTATTCCTTTTAAGGTGAGAGCTGTAGTTGTTTTCATGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCTTATTCCTTTTAAGGTGAGAGCTGTAGTTGTTTTCATGGATA  500

seq1  CTGAGTACCCACAGACAAATGGCAGGGGCTACCAACTTAGGAGCCTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTACCCACAGACAAATGGCAGGGGCTACCAACTTAGGAGCCTGGGT  550

seq1  TCAGGCAAGCCATGTGGCTGGCAGGTACAATGAGTTTCTAGCACCATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAAGCCATGTGGCTGGCAGGTACAATGAGTTTCTAGCACCATACC  600

seq1  AGGACCTCAGAACAAACTAAAGACAAGCACCTGCCTTCCTTCTACCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCAGAACAAACTAAAGACAAGCACCTGCCTTCCTTCTACCAGCA  650

seq1  TGAAAGTGAGCTTTCTACAAAGACCACACCCAGTGAGGAAGGGTGAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGAGCTTTCTACAAAGACCACACCCAGTGAGGAAGGGTGAGAAG  700

seq1  TGAAGGGGGCAAGGGCCCCTGGGTGCTGAGTTTGCACAAACTTTCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGGCAAGGGCCCCTGGGTGCTGAGTTTGCACAAACTTTCCTGGA  750

seq1  AGCTGTATGGGAG-AACTCATGTGGGTGGG-TGGGTAGGTGGG  791
      ||||||||||||| |||||||||||||||| ||||||||||||
seq2  AGCTGTATGGGAGAAACTCATGTGGGTGGGTTGGGTAGGTGGG  793

seq1: chrY_1870395_1870483
seq2: B6Ng01-127J15.g_479_567

seq1  AACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCA  50
      ||||||| ||||||||||||| |||||| |||||||| ||||| ||||||
seq2  AACAACAATATGAACTAACCAGTACCCCAGAGCTCTTTACTCTAGCTGCA  50

seq1  TAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA  89
      || ||||||||||| |||||||||||||||||||| |||
seq2  TATGTATCAAAAGACGGCCTAGTCGGCCATCACTGCAAA  89