BAC Information

Click to search

BAC

Clone NameB6Ng01-127M22
Chromosome1 (Build37)Y (Build37)
Map Location 133,960,520 - 133,961,111573,321 - 573,358
singlet/doubletsingletsinglet
Overlap geneMfsd4
Upstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4
Downstream genePctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127M22.bB6Ng01-127M22.g
ACCDH929826DH929827
length587479
definitionDH929826|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M22, 5' end.DH929827|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(133,960,520 - 133,961,111)(573,321 - 573,358)
sequence
cttatcttcaaatcccatgctgcctggtatcagctaagaatgcctctcct
gcaagcctttgtagcaaaccgagtcttcatacccttcctcaaagccggct
ccacagcccggttgcatctcacatcactgggcccttgcagaccctggaac
aaagcactgacagttctcctccctggactgggctctgattggcttcagtt
ctagacagcctctgccccttcatcagcttgtccacctttcagcctgctac
aaaccttgctagaaacatgttaggtgtgctggagccctaaagggaattca
gcactaggcaagttcttatttagagacaactcaaaaccagtctcagtggt
gtatgactgtaatcccagtccgtgggagatggagatgggaggatcaggaa
tacagagttatcctccactacataaggagtttgagaccatcctggactag
ttgagaatttgtccccagcaactatccccaagggaagtaaaaacatttgt
ccacacaaaaatgtatccatggatgttcatggcaacattgctcataataa
gcgggaaataaggtatattttcataagcaaatggcca
gaattcatgagattcttagacaaatggatggaactaaaaaacacaaaaga
acacacatgatatgcactcactgataagtggatattagccaagaagctca
gaatacccaagatacaattcacagaccacatgaagctcaagaagaaggat
gatcaaagtatgaatactttggtcctccttaggagggataacaaaatgcc
catgggaggagttacagagacaaagtgtggaacagggactgaaggaaaag
ccatccagagactgacccacctggggatccatcccatatacagtcaccaa
acccagacagtattatggattccaacaagtgcttgctgacaggtccctga
tttagctgtctcctgagaggctctatcactgtctgataactacagaggtg
gatgctctcagccaacctttggactaagcacagggtccccaatggaggaa
ctagagaaaggacccaaggagctgaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133960520_133961111
seq2: B6Ng01-127M22.b_49_641 (reverse)

seq1  TGGCCATTTGCTTATGAAAATATACCTTATTT-CCGCTTATTATGAGCAA  49
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCCATTTGCTTATGAAAATATACCTTATTTCCCGCTTATTATGAGCAA  50

seq1  TGTTGCCATGAACATCCATGGATACATTTTTGTGTGGACAAATGTTTTTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCATGAACATCCATGGATACATTTTTGTGTGGACAAATGTTTTTA  100

seq1  CTTCCCTTGGGGATAGTTGCTGGGGACAAATTCTCAACTAGTCCAGGATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTGGGGATAGTTGCTGGGGACAAATTCTCAACTAGTCCAGGATG  150

seq1  GTCTCAAACTCCTTATGTAGTGGAGGATAACTCTGTATTCCTGATCCTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAACTCCTTATGTAGTGGAGGATAACTCTGTATTCCTGATCCTCC  200

seq1  CATCTCCATCTCCCACGGACTGGGATTACAGTCATACACCACTGAGACTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCATCTCCCACGGACTGGGATTACAGTCATACACCACTGAGACTG  250

seq1  GTTTTGAGTTGTCTCTAAATAAGAACTTGCCTAGTGCTGAATTCCCTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGTTGTCTCTAAATAAGAACTTGCCTAGTGCTGAATTCCCTTTA  300

seq1  GGGCTCCAGCACACCTAACATGTTTCTAGCAAGGTTTGTAGCAGGCTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCAGCACACCTAACATGTTTCTAGCAAGGTTTGTAGCAGGCTGAA  350

seq1  AGGTGGACAAGCTGATGAAGGGGCAGAGGCTGTCTAGAACTGAAGCCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACAAGCTGATGAAGGGGCAGAGGCTGTCTAGAACTGAAGCCAAT  400

seq1  CAGAGCCCAGTCCAGGGAGGAGAACTGTCAGTGCTTTGTTCCAGGGTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCAGTCCAGGGAGGAGAACTGTCAGTGCTTTGTTCCAGGGTCTG  450

seq1  CAAGGGCCCAGTGATGTGAGATGCAACCGGGCTGTGGAGCCGGCTTTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCCCAGTGATGTGAGATGCAACCGGGCTGTGGAGCCGGCTTTGAG  500

seq1  GAAGGGTATGAAGACTCGGTTTGCTACAAAGGCTTGCAGGAGAGGCATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTATGAAGACTCGGTTTGCTACAAAGGCTTGCAGGAGAGGCATTC  550

seq1  TTAGCTGATACCAGGCAGCATGGGATTTGAAGATAAGGAATTC  592
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGATACCAGGCAGCATGGGATTTGAAGATAAGGAATTC  593

seq1: chrY_573321_573358
seq2: B6Ng01-127M22.g_512_549

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      |||||||| |||||||||| |||||||||||| |||||
seq2  ATGGAGGAACTAGAGAAAGGACCCAAGGAGCTGAAGGG  38