BAC Information

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BAC

Clone NameB6Ng01-128D15
Chromosome13 (Build37)Y (Build37)
Map Location 10,748,142 - 10,749,3371,120,660 - 1,120,755
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D15.bB6Ng01-128D15.g
ACCDH930137DH930138
length1,184973
definitionDH930137|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D15, 5' end.DH930138|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,748,142 - 10,749,337)(1,120,660 - 1,120,755)
sequence
gaattcactgtgttgtggaagatgacttgagctcctgattctcctgcctc
tacctcctaggagctgggattacagttctacaatgccacactcagcttgg
aagcttggaagaagttttagttcataaggagaaatgcagagaattctgtg
gatcaagatcttaccattcacaaaaccaaaaatgttcactgtgctgcctt
ttgcacagcaagccaagacaatcaagttaataaaatgtagagctggaaag
gtagattttaaacttcaggcacatgtgaacattggttgcccagttaaaaa
tgcatatagggctctctagaagaacaacttctctaaaggagaaaagccag
aaacagggttctcaagggatcttactaattcatgtgactgattgttaatc
tcttttccaattaagactgtatatttgaatagaactgtctgggtcaactc
tagcagtccttgaaacacaggtactggcgatattaccagatggcaaaaac
ctgtaaaaatgaggattggtattttgatcctcagcaccaagttcactgcc
ctggactcacaatggcccaactgtaaccccgtggtcaaaactcaaagacc
agagattcctgggtcaggctggataactagctagactttcagaatcagta
actatcaggttcagtgagagattctgactcaaccaatgaatcagagtgat
tgaagaagatgcctgatgtcaaccttaggtttccacacatatatacatat
gtacacacccacctaagcatacatgtacaccccaaaacaccaaaatagaa
tatggatacctatacacactatatataaccaaatggaaatgtaggattag
atgcatcaatagcagtttctttttcaggtacctgaagcttggccagcatc
acccttggagttccaggtgagtatcctttgcttcacaggtagctactttc
ccagtgtatcctgtgggatgaggctagagctctggtctctgctgatactg
atatatcatcccataatcatatctcattcttacttcattttgagtcctag
tcattgtataatccagtgctcccattgctattcatatgcagatcatgctc
acacacagatttgtcaaagttaataaatagcaacaccacttcctgagctg
gcctgactctgatcctggtttgaatcctttgctt
gaattctctgcttagctctgtaccccctttaaaaaatgggttatttgatg
ttttctggagtgtagcttcttgagttctttttatattttggatattatcc
ctctgtgtgatacagggttagtgacgaaattttcccaatctttaggttgc
tgttttgtcctatcgatagtgtcctttgccttgtagaagcttccatttca
agaagtcccatttatcatttatttatttatttatttatttatttttatat
aatttacatttctttttttctttttccaattttttattagatattttctt
tttttgttttattcttatttttattagatattttctttatatttcaaatg
ctatcccgaaaattctttataccctcccccagccctgctcccctacccac
ccactcccacttcttggccctggcattcccctgtactggggcatataaag
tttgcaagaccaggggcctcttctcccaatgatggctgagtaggccatct
tctgctacatatgcagctagatacatgagctctgggggtactggttagtt
tatattgctgttccacttgtagggttgtagacccctttagctcctcaggt
actagctccttcattgggagccctgtgtttcatcctatagatgaccgtga
gcatctacttctgtatctgccaggcactgtcatagcctcactcgagatag
ctatatcagggtcctttcagcaaaatctcgctggcatatgcaatagtgtc
tgggtttggtggcttattatgggatggatcctgggtgaggtagtctctgg
atggtccatccttttgtcttagctacaaggtattttcttcatttacattc
aaatgctatcccaaagtccctacaccgccgtccccacctgctctcctatt
gattttagcacttgagcattggtatttgttcagaaattttttcctatgcc
aatgcattcagtattcccacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10748142_10749337
seq2: B6Ng01-128D15.b_50_1233 (reverse)

seq1  AAGCAAAGGGATTCAAAACAAGAATCAGAGTCAGCCAAGCTTCAGGAAGT  50
      ||||||| |||||| |||| || ||||||||||| | ||| |||||||||
seq2  AAGCAAA-GGATTC-AAACCAGGATCAGAGTCAGGCCAGC-TCAGGAAGT  47

seq1  GGTGTTGCCTATTATTAAACTGTGACAAATCTGTGTGTTGAGCCATGATC  100
      ||||||| |||||  | |||| ||||||||||||||| |||| |||||||
seq2  GGTGTTG-CTATTTATTAACTTTGACAAATCTGTGTG-TGAG-CATGATC  94

seq1  TGCCATATG-ATAGCAATGGGAAGCACTGGATTATACAATGACTAGGACC  149
      || |||||| ||||||||||| |||||||||||||||||||||||||| |
seq2  TG-CATATGAATAGCAATGGG-AGCACTGGATTATACAATGACTAGGA-C  141

seq1  TCAAAATGAAGTAAGAATGAGAATATGATTATGGGATGAATATAATCAGT  199
      ||||||||||||||||||||| |||||||||||||||| |||| ||||||
seq2  TCAAAATGAAGTAAGAATGAG-ATATGATTATGGGATG-ATAT-ATCAGT  188

seq1  ATCAGCAGAGACCAGAGCTCTAGCCCTCATCCCACAGGATACACTGGGAA  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCAGCAGAGACCAGAGCTCTAG-CCTCATCCCACAGGATACACTGGGAA  237

seq1  AGTAGCTACCTGTGAAGCAAAGGATACTCACCTGGAACTCCAAGGGTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTACCTGTGAAGCAAAGGATACTCACCTGGAACTCCAAGGGTGAT  287

seq1  GCTGGCCAAGCTTCAGGTACCTGAAAAAGAAACTGCTATTGATGCATCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAAGCTTCAGGTACCTGAAAAAGAAACTGCTATTGATGCATCTA  337

seq1  ATCCTACATTTCCATTTGGTTATATATAGTGTGTATAGGTATCCATATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACATTTCCATTTGGTTATATATAGTGTGTATAGGTATCCATATTC  387

seq1  TATTTTGGTGTTTTGGGGTGTACATGTATGCTTAGGTGGGTGTGTACATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGTGTTTTGGGGTGTACATGTATGCTTAGGTGGGTGTGTACATA  437

seq1  TGTATATATGTGTGGAAACCTAAGGTTGACATCAGGCATCTTCTTCAATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATGTGTGGAAACCTAAGGTTGACATCAGGCATCTTCTTCAATC  487

seq1  ACTCTGATTCATTGGTTGAGTCAGAATCTCTCACTGAACCTGATAGTTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATTCATTGGTTGAGTCAGAATCTCTCACTGAACCTGATAGTTAC  537

seq1  TGATTCTGAAAGTCTAGCTAGTTATCCAGCCTGACCCAGGAATCTCTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGAAAGTCTAGCTAGTTATCCAGCCTGACCCAGGAATCTCTGGT  587

seq1  CTTTGAGTTTTGACCACGGGGTTACAGTTGGGCCATTGTGAGTCCAGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTTTTGACCACGGGGTTACAGTTGGGCCATTGTGAGTCCAGGGC  637

seq1  AGTGAACTTGGTGCTGAGGATCAAAATACCAATCCTCATTTTTACAGGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTTGGTGCTGAGGATCAAAATACCAATCCTCATTTTTACAGGTT  687

seq1  TTTGCCATCTGGTAATATCGCCAGTACCTGTGTTTCAAGGACTGCTAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATCTGGTAATATCGCCAGTACCTGTGTTTCAAGGACTGCTAGAG  737

seq1  TTGACCCAGACAGTTCTATTCAAATATACAGTCTTAATTGGAAAAGAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCAGACAGTTCTATTCAAATATACAGTCTTAATTGGAAAAGAGAT  787

seq1  TAACAATCAGTCACATGAATTAGTAAGATCCCTTGAGAACCCTGTTTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCAGTCACATGAATTAGTAAGATCCCTTGAGAACCCTGTTTCTG  837

seq1  GCTTTTCTCCTTTAGAGAAGTTGTTCTTCTAGAGAGCCCTATATGCATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTCCTTTAGAGAAGTTGTTCTTCTAGAGAGCCCTATATGCATTT  887

seq1  TTAACTGGGCAACCAATGTTCACATGTGCCTGAAGTTTAAAATCTACCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGGCAACCAATGTTCACATGTGCCTGAAGTTTAAAATCTACCTT  937

seq1  TCCAGCTCTACATTTTATTAACTTGATTGTCTTGGCTTGCTGTGCAAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTACATTTTATTAACTTGATTGTCTTGGCTTGCTGTGCAAAAG  987

seq1  GCAGCACAGTGAACATTTTTGGTTTTGTGAATGGTAAGATCTTGATCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACAGTGAACATTTTTGGTTTTGTGAATGGTAAGATCTTGATCCAC  1037

seq1  AGAATTCTCTGCATTTCTCCTTATGAACTAAAACTTCTTCCAAGCTTCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTCTGCATTTCTCCTTATGAACTAAAACTTCTTCCAAGCTTCCA  1087

seq1  AGCTGAGTGTGGCATTGTAGAACTGTAATCCCAGCTCCTAGGAGGTAGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTGTGGCATTGTAGAACTGTAATCCCAGCTCCTAGGAGGTAGAG  1137

seq1  GCAGGAGAATCAGGAGCTCAAGTCATCTTCCACAACACAGTGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAATCAGGAGCTCAAGTCATCTTCCACAACACAGTGAATTC  1184

seq1: chrY_1120660_1120755
seq2: B6Ng01-128D15.g_439_539

seq1  ACCCACCCCCA------CTCCCCTGCCCACCCACTCCCCCTTTTTGGCCC  44
      |||| ||||||      ||||||| ||||||||||||| ||| |||||||
seq2  ACCCTCCCCCAGCCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCCC  50

seq1  TGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCT  94
      ||| |||||||||||||||||||||||||||||||||| || | ||||||
seq2  TGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGACC-AGGGGCCT  99

seq1  CT  96
      ||
seq2  CT  101