BAC Information

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BAC

Clone NameB6Ng01-128K14
ChromosomeY (Build37)17 (Build37)
Map Location 1,870,346 - 1,870,52454,836,943 - 54,838,018
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128K14.bB6Ng01-128K14.g
ACCDH930452DH930453
length4941,077
definitionDH930452|Mus musculus domesticus DNA, BAC clone: B6Ng01-128K14, 5' end.DH930453|Mus musculus domesticus DNA, BAC clone: B6Ng01-128K14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,524)(54,836,943 - 54,838,018)
sequence
ttttaactgaacgaagaccaaagtgtggacactttgccccctcttagaat
tgggaacaaaacacccgtggaaggagttacagagacaaagtttggagctg
agacaaaaggatggaccatctagagactgccatatccagggatgcatccc
ataatcagcctccaaatgctgacaccattgcatacactagcaagattgtg
ctgataggactctgatatagttgtctctagtgagactatgccacggccta
gcaaacacagaagtggatgcgcacagtcagctattggatggatcacaggg
cctcctatggaggagctagagaaagtacccaaggagctaaagggatctgc
aaccctataagtggaacaacattatgaactaaccagtaccccggagctct
tgactctagctgcatatgtatcaaaagatggcctagtcggccatcacttg
aaagagaggcccattggacttgcaaactttatatgccccagtac
gaattccatgactgatttttgataagacacattattagccttcctggtga
attttagagtttacttttcactttactctagtcacatgtatgttcatacc
tagctccttcccaagccattccctcttcctgtctcttagttccttttctt
cttcctcaattttattttttcttccaactttgccagttttctgtccccag
acaggaatataaatggttgtattatcccttcttcagtttccccttttagt
tattttataaatatatttcactgaaacaccaaactcttggcctatttttt
gttcattagtaaatccaggttttctagtttttgttaagttttggataggg
taggtctattgagaggacggtgagatggactaacagggaatacagaattt
attagaagagttattaatgctgtggacagagagcagagggtcaacaatat
ggtgagggctcatgggagagtgtaggtcccagaagcactgaaagacgtca
tggccagttccttgataagaataagaatacacattagtgtacgtctactt
ataccttagatggggagatttttagtaaaggaccccagactggttttctg
gttatcacataggcagcatggaagagcatggaaaacaggaacagttggta
ctgagaattagcatcagcatctttggtgttaattcaattattaggttagg
aagcctgtctagagtgtccctgtagatactgttcattctctgtgagaagc
cccagctatttccaagtaggccagattcaaacacgttcctccagcctcct
atttgccaatctgaacacttagttctcacaatatcagctatgatattcct
gtaaaggagctggtctacaatatgccgaggactacttcagctgatcagat
gctggaatcctgcagctactagagccacagtgaactcccaaatcacatgg
aaccctaaagtaggtattttctgaaaaaattgtcagtcatcaaaaggagg
agagcccttggtcctataaagattctatgccccatattaaggcgacttgc
caaggccagaaagcaggaatgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870524
seq2: B6Ng01-128K14.b_371_549

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAAGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTTGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTAC  179
      |||| ||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTAC  179

seq1: chr17_54836943_54838018
seq2: B6Ng01-128K14.g_70_1146

seq1  GAATTCCATGACTGATTTTTGATAAGACACATTATTAGCCTTCCTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACTGATTTTTGATAAGACACATTATTAGCCTTCCTGGTGA  50

seq1  ATTTTAGAGTTTACTTTTCACTTTACTCTAGTCACATGTATGTTCATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGTTTACTTTTCACTTTACTCTAGTCACATGTATGTTCATACC  100

seq1  TAGCTCCTTCCCAAGCCATTCCCTCTTCCTGTCTCTTAGTTCCTTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTCCCAAGCCATTCCCTCTTCCTGTCTCTTAGTTCCTTTTCTT  150

seq1  CTTCCTCAATTTTATTTTTTCTTCCAACTTTGCCAGTTTTCTGTCCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAATTTTATTTTTTCTTCCAACTTTGCCAGTTTTCTGTCCCCAG  200

seq1  ACAGGAATATAAATGGTTGTATTATCCCTTCTTCAGTTTCCCCTTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATATAAATGGTTGTATTATCCCTTCTTCAGTTTCCCCTTTTAGT  250

seq1  TATTTTATAAATATATTTCACTGAAACACCAAACTCTTGGCCTATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAAATATATTTCACTGAAACACCAAACTCTTGGCCTATTTTTT  300

seq1  GTTCATTAGTAAATCCAGGTTTTCTAGTTTTTGTTAAGTTTTGGATAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAGTAAATCCAGGTTTTCTAGTTTTTGTTAAGTTTTGGATAGGG  350

seq1  TAGGTCTATTGAGAGGACGGTGAGATGGACTAACAGGGAATACAGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTATTGAGAGGACGGTGAGATGGACTAACAGGGAATACAGAATTT  400

seq1  ATTAGAAGAGTTATTAATGCTGTGGACAGAGAGCAGAGGGTCAACAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGAGTTATTAATGCTGTGGACAGAGAGCAGAGGGTCAACAATAT  450

seq1  GGTGAGGGCTCATGGGAGAGTGTAGGTCCCAGAAGCACTGAAAGACGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGCTCATGGGAGAGTGTAGGTCCCAGAAGCACTGAAAGACGTCA  500

seq1  TGGCCAGTTCCTTGATAAGAATAAGAATACACATTAGTGTACGTCTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGTTCCTTGATAAGAATAAGAATACACATTAGTGTACGTCTACTT  550

seq1  ATACCTTAGATGGGGAGATTTTTAGTAAAGGACCCCAGACTGGTTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTAGATGGGGAGATTTTTAGTAAAGGACCCCAGACTGGTTTTCTG  600

seq1  GTTATCACATAGGCAGCATGGAAGAGCATGGAAAACAGGAACAGTTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACATAGGCAGCATGGAAGAGCATGGAAAACAGGAACAGTTGGTA  650

seq1  CTGAGAATTAGCATCAGCATCTTTGGTGTTAATTCAATTATTAGGTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTAGCATCAGCATCTTTGGTGTTAATTCAATTATTAGGTTAGG  700

seq1  AAGCCTGTCTAGAGTGTCCCTGTAGATACTGTTCATTCTCTGTGAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCTAGAGTGTCCCTGTAGATACTGTTCATTCTCTGTGAGAAGC  750

seq1  CCCAGCTATTTCCAAGTAGGCCAGATTCAAACACGTTCCTCCAGCCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTATTTCCAAGTAGGCCAGATTCAAACACGTTCCTCCAGCCTCCT  800

seq1  ATTTGCCAATCTGAACACTTAGTTCTCACAATATCAGCTATGATATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAATCTGAACACTTAGTTCTCACAATATCAGCTATGATATTCCT  850

seq1  GTAAAGGAGCTGGTCTACAATATGCCGAGGACTACTTCAGCTGATCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAGCTGGTCTACAATATGCCGAGGACTACTTCAGCTGATCAGAT  900

seq1  GCTGGGAATCCTGCAGCTACTAGAG-CACAGTGAACTCCCAAATCACATG  949
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCT-GGAATCCTGCAGCTACTAGAGCCACAGTGAACTCCCAAATCACATG  949

seq1  GAACCCTAAAGTAGGTA-TATCTGATAAAAATTGTCAGTCATCAAAGGGA  998
      ||||||||||||||||| | ||||| |||||||||||||||||||| |||
seq2  GAACCCTAAAGTAGGTATTTTCTGA-AAAAATTGTCAGTCATCAAAAGGA  998

seq1  GGAGAGGCCCTTGGTCCTATAAAGATTCTATGCCCCAT-TATAGGCGAC-  1046
      ||||| |||||||||||||||||||||||||||||||| |  ||||||| 
seq2  GGAGA-GCCCTTGGTCCTATAAAGATTCTATGCCCCATATTAAGGCGACT  1047

seq1  TGCCAGGGCCAGGAAGCAGGAATGGGTGGG  1076
      ||||| |||||| |||||||||||||||||
seq2  TGCCAAGGCCAGAAAGCAGGAATGGGTGGG  1077