BAC Information

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BAC

Clone NameB6Ng01-130F04
ChromosomeY (Build37)7 (Build37)
Map Location 1,120,590 - 1,120,845109,808,644 - 109,808,710
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130F04.bB6Ng01-130F04.g
ACCDH931669DH931670
length964892
definitionDH931669|Mus musculus domesticus DNA, BAC clone: B6Ng01-130F04, 5' end.DH931670|Mus musculus domesticus DNA, BAC clone: B6Ng01-130F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,590 - 1,120,845)(109,808,644 - 109,808,710)
sequence
gaattcagtatcccactgttgccaagagacaagtcatagagacaaaaact
aaatggaaaatagctggagataactgctattacaaactacatggacccaa
caaataaattaatccagcaatcttcttacaatgacaaataagaaaaatga
ggggtcaccttggacacagagttggcagacacccccatggtgcctaagag
gactctcaagaggatcttagcataactggtgagctgaacacagcatcctt
tctttttttttttaatgaagtatttacctcatttacatttccaatgctat
cccaaaagtcccccatactctctccccactcccctacccacccactccca
tttattgtccctggacttcccctgtactgaggcatataaagtttgcatga
ccaatgggcctctctttccactgatggccaactaggccatcttttgatac
atatgcagctagagacaagagttccagggtactggttagttcatattgtt
gtttcaactataaaccctatagcagatcccattagctccttgggtaattt
ctctagctcctgcactgagggccctgtgatccatccaatagctgactgtg
agcatccacttctgtttttgctaggccccgacatagtctcacaagagaca
gctatatcagggtcctttcagcaaaatcttgctagtgtatgcaatgttgt
caccttttggaggctgattatgggatggatctctggatatggcagtctct
agatggtccatccttttatcactgctccaaactttgtctctgtaactcct
tccatgggtgttttgttcccaattctaagaaggggcaaactgtccacact
ttggtcttccttcttctggagttccatgcgtttcataattatatattgta
tcttgggtattctaagtttctgggctaatatccacttaccagtgagtaca
tatcatttgagttc
gaattcaaagccagcatggtctacaaagtgagttccaggacagccagggc
tacacagagaaaccctgtctcgaaaaacctaaataaatacataatacata
catacatacatacatacatacatacatacatacatacaagacatagactg
gttacataaacaggacctaatattttactgcatacaggaaacccacctga
gtgaaaaggacagacactacctcagagtaaaaggctggaaaacaattttc
taagcaaatagtcccaagaaaaaagctgaagtagccattcaaatattgaa
taaaatcaactttcaatctaaagttatcaaaaaaaaaaaatgaggagggg
cacttcttactcatcaaagttaaaatttaccaaggtgaatttcagaatct
cagttcagaatttctatgttccaaatgcaagagcatccacattcattaag
aaactttagaaaagcacaaaacacacattgtaccacacagaataatagtg
ggaaacttcaacaccccaatcttatcaatggacaaatcttggaaatagaa
atgaaacagagacacagtgaaactaacagaagttatgtaacaaatggatt
taactgatatctatagaacattttaatctatggtaccttctccaaaactg
accatataattgctcacaaaacaggcctcaacagatacaagaagactgaa
attatcctatgcatcctatcagatcaccaaggactatggctgatcttcaa
taataacataaataatggaaagcctacatacaggtggaagctgaacaaag
tctactcatgataacttggtcaaggaagaaataagaaggaaattaaagac
gttttagagtttaatgaaatgaagccacagcatacccaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120590_1120845
seq2: B6Ng01-130F04.b_298_545

seq1  -TTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTA  49
       |||||   ||||| || | ||||||| ||||||||||||||||||||||
seq2  TTTTTT---TTTTTAATGAAGTATTTACCTCATTTACATTTCCAATGCTA  47

seq1  TACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACT  99
      | ||||||||||||||||  | |    |||||||||||| ||||||||||
seq2  TCCCAAAAGTCCCCCATACTCTC---TCCCCACTCCCCTACCCACCCACT  94

seq1  CCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGC  149
      |||  || ||| ||||||  ||||||||||||| ||||||||||||||||
seq2  CCCATTTATTGTCCCTGGACTTCCCCTGTACTGAGGCATATAAAGTTTGC  144

seq1  AAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG  199
      | | |||||||||||||||||||| |||||||| ||||||||||||||||
seq2  ATGACCAATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTTTG  194

seq1  ATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAA  249
      ||| |||||||||||||| |||||| ||| ||||||||||||| ||||| 
seq2  ATACATATGCAGCTAGAGACAAGAGTTCCAGGGTACTGGTTAGTTCATA-  243

seq1  CGTTGTT  256
        |||||
seq2  --TTGTT  248

seq1: chr7_109808644_109808710
seq2: B6Ng01-130F04.g_86_409 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTTTTTTTTTTTGATAACTTTAGATTGAAAGTTGATTTTATTCAATATTT  50

seq1  --------------------------------------------------  0
                                                        
seq2  GAATGGCTACTTCAGCTTTTTTCTTGGGACTATTTGCTTAGAAAATTGTT  100

seq1  --------------------------------------------------  0
                                                        
seq2  TTCCAGCCTTTTACTCTGAGGTAGTGTCTGTCCTTTTCACTCAGGTGGGT  150

seq1  --------------------------------------------------  0
                                                        
seq2  TTCCTGTATGCAGTAAAATATTAGGTCCTGTTTATGTAACCAGTCTATGT  200

seq1  --------------------------------------------------  0
                                                        
seq2  CTTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATTAT  250

seq1  ----TTTTTT---TTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  43
          || |||   ||||| |||||||||||||||||| ||||||||||||
seq2  GTATTTATTTAGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  300

seq1  TCCTGGAACTCACTTTGTAGACCA  67
      ||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTAGACCA  324