BAC Information

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BAC

Clone NameB6Ng01-132J11
Chromosome13 (Build37)Y (Build37)
Map Location 68,732,787 - 68,733,030573,454 - 573,555
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3
Downstream gene1700001L19Rik, Adcy2, LOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132J11.bB6Ng01-132J11.g
ACCDH933356DH933357
length196262
definitionDH933356|Mus musculus domesticus DNA, BAC clone: B6Ng01-132J11, 5' end.DH933357|Mus musculus domesticus DNA, BAC clone: B6Ng01-132J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,732,787 - 68,733,030)(573,454 - 573,555)
sequence
ctcaatcatgacttttctctcaattaatattagactatgtcagtggataa
ttacaggtaagtagaacacaaaacaactaacttccatccaggttctctct
ctctctttctctctctctctctctctctccctctccctctctctctctct
ctctctctctctcgctctctcgtgctttttttttttttttctttct
catgagaaaaccaaattcacacaatatctttccaggaatctagcccttca
aaggataataaagggaaaacaccaacacaaagttggaaactacccctaga
aaaagcaagacagtaatgcttcaacaaacttaaaagaagacagccacaag
aacagaatcagccatcattgggaagagaggccccttggttttacaaactt
tataagtcccagtacaggggaactccagggccaagaagtgggagtgagtg
ggtaggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_68732787_68733030
seq2: B6Ng01-132J11.b_142_237 (reverse)

seq1  AAAAAAAAAAAAAAGGTGAAAATTGTTAGTAGGCAAGTGGACTCTGGAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCAGTGATATTATCTGAGATGGTCATTAGGGGGCAGCAAAGTTTATGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATTGATTGAGCTAAAGGAGAAACCAGGGTGTGTGTGTGTGTGTGTGTGT  150
                   |||  | |||  |                        
seq2  -------------AAAAAAAAAAAAA------------------------  13

seq1  GTGTGTGTGTGTGTATGAGACAGAGAGAGAGAGAGAGAATATGAGAGAGA  200
                  | | |||| || ||||||||||||||    ||||||||
seq2  -----------AGCACGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGA  52

seq1  GAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  244
      | |||||||||||||||||||||||||||| |||||||||||||
seq2  GGGAGAGGGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGA  96

seq1: chrY_573454_573555
seq2: B6Ng01-132J11.g_233_334

seq1  GCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCC  50
      ||||||||||||||||||||||||||||| || ||||||||||| | |||
seq2  GCCATCATTGGGAAGAGAGGCCCCTTGGTTTTACAAACTTTATAAGTCCC  50

seq1  AGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAG  100
      ||||||||||||| ||||||||||||||||||||   |||||||||| ||
seq2  AGTACAGGGGAACTCCAGGGCCAAGAAGTGGGAGTGAGTGGGTAGGGGAG  100

seq1  CA  102
      ||
seq2  CA  102