BAC Information

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BAC

Clone NameB6Ng01-132M23
ChromosomeY (Build37)
Map Location 1,976,020 - 1,976,860
singlet/doubletsinglet
Overlap geneLOC100042840
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132M23.bB6Ng01-132M23.g
ACCDH933519DH933520
length1,070842
definitionDH933519|Mus musculus domesticus DNA, BAC clone: B6Ng01-132M23, 5' end.DH933520|Mus musculus domesticus DNA, BAC clone: B6Ng01-132M23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttgtgattggggtacctctctcagggtgaagccttccaagac
caaccatttgcctaggaattttataaattcattctttttaatagctaagt
agtactccattgtgtaaatgtgccacattttttgtatccattcctctgtt
gaggagcatctgggttctttccagattctggctatcataaataaggctat
tatgaacatagtggagtatgtctttcttactacttggaaaatcttctgga
tatatgcccaggagaggtattgcagaatcctccagtagtactaagtccaa
ttttctgaggaaccaccggagtgatttccagagtggttgtacaagcttgc
aatccagaccaaaaaaggaggagtgttcctctttctccacatcttcgcca
gcatctgctgtcaactgaatttttgatcttagccattctgactggtgtga
gatggaatctcagggttgttctgatttgcatttccctgatgattaaggat
gctgaacattttttcaggggtttctcagccattcattattcttcagggga
gaattctttgtttagctctgatccccattttttaatggggttatttgatt
ttctggattccacctaattgacttctttataaatattggatattagtctc
ctatctcattttggataggcaaagattctttcccaatcttttggtggcct
ttttttcttattgacggtgtcttttgcctttacagaagctttgcagtttt
atgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgt
tctattcaggaatttttccctgtgcccatatcttcaaggctttttctcca
ctttctcctctataagtttcagtgtgtctgggttttatgttgagtttccc
ttgatccacttagatttgaccttaatacaaggagataggaatggatcaat
tcaaaattcttcttcatgataaccaccagtagtgccagcaccaattgtga
aatgctgtttttttttcacttggatgggttttagcctcctttgtatgaaa
tattcaaggtgaacataggt
gaattcaaattccccacattaacgacaacttcaaactcaccatcaccctc
ccgggtggttcatagcaacctctagctcaaaatgaagaaacaaaaggagc
caggatcaatgggtttgatttagatgcttttaatagcatgtttcattagc
tctgccagctagtaggacactggggctgggtgagggtgaaggtgtggtga
acctccagactctttagtccaaggcatcatcagttgtcttcaggttctgg
tggctcaaacactgatgtgccaccttgtttgaagagttggtggagctgtt
ccttgttctgtaccacctgacacacatgctcaggagctatgcgcttcatg
ccactggtgtgggttacctcaccagccagtccaaggatgttgggtgttaa
gtactcgagcacacccacaaggaatacaagtgcagaagagctcaggcgtc
tagaatagattccctctccaaggaaacgatctacacggctaacaggaaat
tgaagctcagctctctgggagtgggttattttccatcttcttcgcctttg
gcttttcctggccatgatgcttgtttggtgggttttgctcagctggccct
ctctgttggcccgggcctctccaaataaccaagcttctcacccacctatg
aagttatccttgagaggactttgttacaacatacttttatgatatcactg
gtagccactgtactctgggtgttcagtacaaaaatacccatttaggaaac
agttcaccttacctaatatgtcccttttttatctttctcatttcatgtgt
gtgagtgcatgtttgcatgtgcttctgtgtgggcctcacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1976020_1976860
seq2: B6Ng01-132M23.g_66_907

seq1  GAATTCAAATTCCCCACATTAACGACAACTTCAAACTCACCATCACCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTCCCCACATTAACGACAACTTCAAACTCACCATCACCCTC  50

seq1  CCGGGTGGTTCATAGCAACCTCTAGCTCAAAATGAAGAAACAAAAGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGGTTCATAGCAACCTCTAGCTCAAAATGAAGAAACAAAAGGAGC  100

seq1  CAGGATCAATGGGTTTGATTTAGATGCTTTTAATAGCATGTTTCATTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCAATGGGTTTGATTTAGATGCTTTTAATAGCATGTTTCATTAGC  150

seq1  TCTGCCAGCTAGTAGGACACTGGAGCTGGGTGAGGGTGAAGGTGTGGTGA  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGCCAGCTAGTAGGACACTGGGGCTGGGTGAGGGTGAAGGTGTGGTGA  200

seq1  ACCTCCAGACTCTTTAGTCCAAGGCATCATCAGTTGTCTTCAGGTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGACTCTTTAGTCCAAGGCATCATCAGTTGTCTTCAGGTTCTGG  250

seq1  TGGCTCAAACACTGATGTGCCACCTTGTTTGAAGAGTTGGTGGAGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAAACACTGATGTGCCACCTTGTTTGAAGAGTTGGTGGAGCTGTT  300

seq1  CCTTGTTCTGTACCACCTGACACACATGCTCAGGAGCTATGCGCTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCTGTACCACCTGACACACATGCTCAGGAGCTATGCGCTTCATG  350

seq1  CCACTGGTGTGGGTTACCTCACCAGCCAGTCCAAGGATGTTGGGTGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTGTGGGTTACCTCACCAGCCAGTCCAAGGATGTTGGGTGTTAA  400

seq1  GTACTCGAGCACACCCACAAGGAATACAAGTGCAGAAGAGCTCAGGCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCGAGCACACCCACAAGGAATACAAGTGCAGAAGAGCTCAGGCGTC  450

seq1  TAGAATAGATTCCCTCTCCAAGGAAACGATCTACACGGCTAACAGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGATTCCCTCTCCAAGGAAACGATCTACACGGCTAACAGGAAAT  500

seq1  TGAAGCTCAGCTCTCTGGGAGTGGGTTATTTTCCATCTTCTTCGCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCAGCTCTCTGGGAGTGGGTTATTTTCCATCTTCTTCGCCTTTG  550

seq1  GCTTTTCCTGGCCATGATGCTTGTTTGGTGGGTTTTGCTCAGCTGGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCTGGCCATGATGCTTGTTTGGTGGGTTTTGCTCAGCTGGCCCT  600

seq1  CTCTGTTGGCCCGGGCCTCTCCAAATAACCAAGCTTCTCACCCACCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGGCCCGGGCCTCTCCAAATAACCAAGCTTCTCACCCACCTATG  650

seq1  AAGTTATCCTTGAGAGGACTTTGTTACAACATAC-TTTATGATATCACTG  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGTTATCCTTGAGAGGACTTTGTTACAACATACTTTTATGATATCACTG  700

seq1  GTAGCCACTGTACTCT-GGTGTTCAGTACAAAAATACCCATTTAGGAAAC  748
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTAGCCACTGTACTCTGGGTGTTCAGTACAAAAATACCCATTTAGGAAAC  750

seq1  AGTTCACCTTACCTAATATGT-CCTTTTTTATCTTTTCTCATTTTCATGT  797
      ||||||||||||||||||||| ||||||||||| ||||||| ||||||||
seq2  AGTTCACCTTACCTAATATGTCCCTTTTTTATC-TTTCTCA-TTTCATGT  798

seq1  GTGTGAGTGCATGTTTGCATGTGCTCCTGTGTGGGCCACACATA  841
      ||||||||||||||||||||||||| ||||||||||| ||||||
seq2  GTGTGAGTGCATGTTTGCATGTGCTTCTGTGTGGGCCTCACATA  842