BAC Information

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BAC

Clone NameB6Ng01-134F08
ChromosomeY (Build37)4 (Build37)
Map Location 1,544,812 - 1,544,86084,802,451 - 84,803,616
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134F08.bB6Ng01-134F08.g
ACCDH934657DH934658
length6191,163
definitionDH934657|Mus musculus domesticus DNA, BAC clone: B6Ng01-134F08, 5' end.DH934658|Mus musculus domesticus DNA, BAC clone: B6Ng01-134F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,544,812 - 1,544,860)(84,802,451 - 84,803,616)
sequence
gaattctttgattatttttatggttgttcttttacatcttgtgtcctgga
gttgattagataaatttcactggaaaaacattttttacaaagctggtagg
attttggagagaagatgctggcttgatctgttctctctctctctctctct
ctctctctctctctctctctctctctctcattaatcattttattcattta
catttcaaatgatatcccccttcctggtggttatcactctacaaccattc
tatcccatcttccatccccccctcccccttgcctctatgagggataattc
tctatccagttacacactcccctagcatccccctatgctggggcatcaag
ccttcataggaccaagggcccccctccaattgatgtcagataaggccatc
ctctgctacatatgtatctggagccatggatccctccatgtctactcttt
gagtggagatttaatacctaggggctctggttggtcaggttagttggtat
tgcttaccctatggggttgcagtccccttcagctccttcattccttccac
tagctctttcattggtgtccctttgctcagtttgatggtgagctgtgagt
atctccatctgtattggtc
gaattccactctctgataaggggaaatacagaacaggggaaagaagttga
gatgtgtgcatgagtactgacttgggggacttggtgcagatagagaaggc
ctcagctgaatattggcaaaggtccatttttgccaagcattactggaaac
acactagagttaaataaactgagtcatgactcattgcagcgagaaaacaa
ttgctcacaatggagagccataggacatctgaacaggacttgctgtggag
tctggtaagtgcttcatgaagcaaggctgtgctctggacttaatgctgtc
agaaacacagcactcataagttggtgtctcgagaactctctttatgtaca
aagagagaaggctggagtgaggtaggtacctggtggagaaagcagtcaca
tttgtgggcacaaatgcacatatgctggggccattcccatggcttgggtc
atttttgactgtgggaacaagctaaagattattcctctatcttatagttg
tttgggaaatgaagtaagttagtactatacctctatgaccatctacgttc
aaacataagattagagaggggccttgttttatcttatggtagtcacaggg
cagttctcttgtgatgttggttatttgataggaagttaacaaggccagat
cgtatcaactccaaggcctcatgacagtaccaagcagctcacagatgtca
ggggctacttttatctttctttgtaaaagtccagaacctagaatcagaga
aatgatagacagataccagatatgtgataaatagatactcccagtcaagg
tttttattcttagagccagtgattaaaatctatgtaaaaggtgttttgtt
ttaagacttttaatgtgttgtgaatgatttttttgcttgcatgcagatgt
gtgcactgcattcatgtagtacccgaagaggcaagaatatagcatcagat
ctctagaccatgttggaggtaggacttgacttggggtcctctgaaagagc
agcagtgctctaaatcagtcacctatctttctttcccccagagggagttt
tgatagagttacggaatcaataatcaattttaagatttcctaacaatact
aagtctctcatgaggttacccaaacagagtgaaacttgaagagcctggaa
ttattagatatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1544812_1544860
seq2: B6Ng01-134F08.b_179_227 (reverse)

seq1  TGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  49
      ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  49

seq1: chr4_84802451_84803616
seq2: B6Ng01-134F08.g_69_1231 (reverse)

seq1  TAATA-CTAATAATATTCAAGCCTACTTCAAG-TTCAATCTGTTTTGGGT  48
      ||||| ||||||  |||| || || ||||||| |||| |||| |||||||
seq2  TAATATCTAATA--ATTCCAGGCT-CTTCAAGTTTCACTCTG-TTTGGGT  46

seq1  AAACCTCATGAGA-ACTTAAGTATTTGTTA-GAAATCTTAAAATTGATTA  96
       |||||||||||| |||| |||| |||||| |||||||||||||||||||
seq2  -AACCTCATGAGAGACTT-AGTA-TTGTTAGGAAATCTTAAAATTGATTA  93

seq1  TTGATTCAGTAGCTCTATCAAAACTCCCTCTGTGGG-AAGAAAGATAGGT  145
      ||||||| ||| |||||||||||||||||||| ||| |||||||||||||
seq2  TTGATTCCGTAACTCTATCAAAACTCCCTCTGGGGGAAAGAAAGATAGGT  143

seq1  GACTGATTAAGAGCACTTGCTGCTCTTTCAGAGGACCCAAGTTCAAGTCC  195
      |||||||| ||||||| ||||||||||||||||||||| |  ||||||||
seq2  GACTGATTTAGAGCAC-TGCTGCTCTTTCAGAGGACCCCAAGTCAAGTCC  192

seq1  TACCTCCAACATGGTCTAGAGATCTGATGCTATATTCTTGCCTCTTCGGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCAACATGGTCTAGAGATCTGATGCTATATTCTTGCCTCTTCGGG  242

seq1  TACTACATGAATGCAGTGCACACATCTGCATGCAAGCAAAAAAATCATTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATGAATGCAGTGCACACATCTGCATGCAAGCAAAAAAATCATTC  292

seq1  ACAACACATTAAAAGTCTTAAAACAAAACACCTTTTACATAGATTTTAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACATTAAAAGTCTTAAAACAAAACACCTTTTACATAGATTTTAAT  342

seq1  CACTGGCTCTAAGAATAAAAACCTTGACTGGGAGTATCTATTTATCACAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTCTAAGAATAAAAACCTTGACTGGGAGTATCTATTTATCACAT  392

seq1  ATCTGGTATCTGTCTATCATTTCTCTGATTCTAGGTTCTGGACTTTTACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTATCTGTCTATCATTTCTCTGATTCTAGGTTCTGGACTTTTACA  442

seq1  AAGAAAGATAAAAGTAGCCCCTGACATCTGTGAGCTGCTTGGTACTGTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGATAAAAGTAGCCCCTGACATCTGTGAGCTGCTTGGTACTGTCA  492

seq1  TGAGGCCTTGGAGTTGATACGATCTGGCCTTGTTAACTTCCTATCAAATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTTGGAGTTGATACGATCTGGCCTTGTTAACTTCCTATCAAATA  542

seq1  ACCAACATCACAAGAGAACTGCCCTGTGACTACCATAAGATAAAACAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATCACAAGAGAACTGCCCTGTGACTACCATAAGATAAAACAAGG  592

seq1  CCCCTCTCTAATCTTATGTTTGAACGTAGATGGTCATAGAGGTATAGTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTAATCTTATGTTTGAACGTAGATGGTCATAGAGGTATAGTAC  642

seq1  TAACTTACTTCATTTCCCAAACAACTATAAGATAGAGGAATAATCTTTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACTTCATTTCCCAAACAACTATAAGATAGAGGAATAATCTTTAG  692

seq1  CTTGTTCCCACAGTCAAAAATGACCCAAGCCATGGGAATGGCCCCAGCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCCCACAGTCAAAAATGACCCAAGCCATGGGAATGGCCCCAGCAT  742

seq1  ATGTGCATTTGTGCCCACAAATGTGACTGCTTTCTCCACCAGGTACCTAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATTTGTGCCCACAAATGTGACTGCTTTCTCCACCAGGTACCTAC  792

seq1  CTCACTCCAGCCTTCTCTCTTTGTACATAAAGAGAGTTCTCGAGACACCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCAGCCTTCTCTCTTTGTACATAAAGAGAGTTCTCGAGACACCA  842

seq1  ACTTATGAGTGCTGTGTTTCTGACAGCATTAAGTCCAGAGCACAGCCTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGAGTGCTGTGTTTCTGACAGCATTAAGTCCAGAGCACAGCCTTG  892

seq1  CTTCATGAAGCACTTACCAGACTCCACAGCAAGTCCTGTTCAGATGTCCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGAAGCACTTACCAGACTCCACAGCAAGTCCTGTTCAGATGTCCT  942

seq1  ATGGCTCTCCATTGTGAGCAATTGTTTTCTCGCTGCAATGAGTCATGACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTCCATTGTGAGCAATTGTTTTCTCGCTGCAATGAGTCATGACT  992

seq1  CAGTTTATTTAACTCTAGTGTGTTTCCAGTAATGCTTGGCAAAAATGGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATTTAACTCTAGTGTGTTTCCAGTAATGCTTGGCAAAAATGGAC  1042

seq1  CTTTGCCAATATTCAGCTGAGGCCTTCTCTATCTGCACCAAGTCCCCCAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCAATATTCAGCTGAGGCCTTCTCTATCTGCACCAAGTCCCCCAA  1092

seq1  GTCAGTACTCATGCACACATCTCAACTTCTTTCCCCTGTTCTGTATTTCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTACTCATGCACACATCTCAACTTCTTTCCCCTGTTCTGTATTTCC  1142

seq1  CCTTATCAGAGAGTGGAATTC  1166
      |||||||||||||||||||||
seq2  CCTTATCAGAGAGTGGAATTC  1163