BAC Information

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BAC

Clone NameB6Ng01-134P04
ChromosomeX (Build37)Y (Build37)
Map Location 109,648,687 - 109,649,8581,870,346 - 1,870,571
singlet/doubletsingletsinglet
Overlap gene2010106E10Rik
Upstream geneRps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341
Downstream geneZfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134P04.bB6Ng01-134P04.g
ACCDH935119DH935120
length1,153391
definitionDH935119|Mus musculus domesticus DNA, BAC clone: B6Ng01-134P04, 5' end.DH935120|Mus musculus domesticus DNA, BAC clone: B6Ng01-134P04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,648,687 - 109,649,858)(1,870,346 - 1,870,571)
sequence
gaattcttttctctgcataaacaatggctttcatctaggtatttcctttc
atagcttacttatcataaaatacagttgtacatacctcttcacaattgct
ttaaatccttatatttccccacactaaacttcacatttataaagatctct
aattctacagaggttggaaaatgtatttattttatggaaaatacaaaaag
caagaaagctacttaactatatctacttggtctcatttggcatgtttctt
tgtatttggtggttaaatgttctttcatgcatattttatatgcaaggaag
gtaattttttacttccaaagagataatgaatgatagaatatgttaaaaaa
tgttccagtgagcttttactgaatcatattactattttgtaagatgaaca
atggattattgagatttggggatgatttgttttcatattacaataaagga
actgagaaattattgatttcctaaatatatatgtatacatatatatatac
acacatatatatgtatatatatatacatatatatgtatatatatagatgt
gtttaaaaacttagactttttaaaacaatgtcttgctttaagagatcata
ttttatttttcattacttaaaaatagctttgaaatttatatactatttga
tcatattctccccctaccctaagtctctctagatcttctccccctcctta
tctacccaactttaaggtttttttttcctcaaaacaaacaaaaaaaagaa
cccaatacaacaacaaaaccaagaaaatgaaaccacatgcaaaaagattt
tttttctcaaaaacttagctagggttattgagaaaattattttaatatgc
agaatagcccatatttgttttgcccaatatagtagccactagcaccacgt
gactagttacatataaattaaaattattgaaaataaatttagagtgagtg
ctggaaagatggctcagcagtaagagtgcttgctggacaaactaagaaga
tgagtcctatttttgcgatctttgtggaagaagaaaacaatgcctgattg
cttctacctccacacatgcgatgtgacatgaaccatgtgtatacattaca
cacaaaatgagagatacattttggagatgcattatgttgtttcttggcat
ggg
tttgttcagttctgaatgctgacaccattgcatacactagcgagattatg
ctgaaaggaccctgatatagctgtctcttgtcagagtatgcctgggccta
gcaaacatagaagtggatgctcacagtcggctattggatggatcacatgg
cccccaatgaaggagctagagaaagtaccaaagaagctaaagggatctgc
aaccctataggtggaacaacattatgaactaaccagtaccccggagctct
tgactctagctgcatatgcatcaaaagatggcctagtcggccatcactcg
aaagagaggcccattggacacgcaaactttatatgcctcagtacagggga
acgccagggccataaaaggggagtgggtgggtaggggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109648687_109649858
seq2: B6Ng01-134P04.b_50_1202 (reverse)

seq1  CCCATGCAAAGAAAACAAACATAAATGCATCTTCAAAAATGTATCTCTCA  50
      ||||||| ||||||   ||||| |||||||| || |||||||||||||||
seq2  CCCATGCCAAGAAA--CAACAT-AATGCATC-TCCAAAATGTATCTCTCA  46

seq1  TTTTTGTGTGGTATATGTATATACACATGTGTTCATGTCACATCGCATGT  100
       |||||||| ||| |||  |||||||||| ||||||||||||||||||||
seq2  -TTTTGTGT-GTA-ATG--TATACACATG-GTTCATGTCACATCGCATGT  90

seq1  GTGGAGGTAAGAAAGCAAATTCAGGGCATTGTTTTCTTCCTTCCACCAAA  150
      |||||||||   ||||||  ||| |||||||||||||| |||||| ||||
seq2  GTGGAGGTA--GAAGCAA--TCA-GGCATTGTTTTCTT-CTTCCA-CAAA  133

seq1  GATCGCAGAAATAGGACTCATCTTCTTAGGTTTGTCCAGCAAGCACTCTT  200
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  GATCGCAAAAATAGGACTCATCTTCTTA-GTTTGTCCAGCAAGCACTCTT  182

seq1  ACTGCTGAGCCATCTTTCCAGCACTCACTCTAAATTTTATTTTCAATAAT  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTGCTGAGCCATCTTTCCAGCACTCACTCTAAA-TTTATTTTCAATAAT  231

seq1  TTTAATTTATATGTAACTAGTCACGTGGTGCTAGTGGCTACTATATTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTATATGTAACTAGTCACGTGGTGCTAGTGGCTACTATATTGGG  281

seq1  CAAAACAAATATGGGCTATTCTGCATATTAAAATAATTTTCTCAATAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAATATGGGCTATTCTGCATATTAAAATAATTTTCTCAATAACC  331

seq1  CTAGCTAAGTTTTTGAGAAAAAAAATCTTTTTGCATGTGGTTTCATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAAGTTTTTGAGAAAAAAAATCTTTTTGCATGTGGTTTCATTTTC  381

seq1  TTGGTTTTGTTGTTGTATTGGGTTCTTTTTTTTGTTTGTTTTGAGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGTTGTTGTATTGGGTTCTTTTTTTTGTTTGTTTTGAGGAAAA  431

seq1  AAAAACCTTAAAGTTGGGTAGATAAGGAGGGGGAGAAGATCTAGAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTTAAAGTTGGGTAGATAAGGAGGGGGAGAAGATCTAGAGAGAC  481

seq1  TTAGGGTAGGGGGAGAATATGATCAAATAGTATATAAATTTCAAAGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTAGGGGGAGAATATGATCAAATAGTATATAAATTTCAAAGCTAT  531

seq1  TTTTAAGTAATGAAAAATAAAATATGATCTCTTAAAGCAAGACATTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTAATGAAAAATAAAATATGATCTCTTAAAGCAAGACATTGTTT  581

seq1  TAAAAAGTCTAAGTTTTTAAACACATCTATATATATACATATATATGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTCTAAGTTTTTAAACACATCTATATATATACATATATATGTAT  631

seq1  ATATATATACATATATATGTGTGTATATATATATGTATACATATATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATACATATATATGTGTGTATATATATATGTATACATATATATTT  681

seq1  AGGAAATCAATAATTTCTCAGTTCCTTTATTGTAATATGAAAACAAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCAATAATTTCTCAGTTCCTTTATTGTAATATGAAAACAAATCA  731

seq1  TCCCCAAATCTCAATAATCCATTGTTCATCTTACAAAATAGTAATATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAATCTCAATAATCCATTGTTCATCTTACAAAATAGTAATATGAT  781

seq1  TCAGTAAAAGCTCACTGGAACATTTTTTAACATATTCTATCATTCATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAAGCTCACTGGAACATTTTTTAACATATTCTATCATTCATTAT  831

seq1  CTCTTTGGAAGTAAAAAATTACCTTCCTTGCATATAAAATATGCATGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGAAGTAAAAAATTACCTTCCTTGCATATAAAATATGCATGAAA  881

seq1  GAACATTTAACCACCAAATACAAAGAAACATGCCAAATGAGACCAAGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTAACCACCAAATACAAAGAAACATGCCAAATGAGACCAAGTAG  931

seq1  ATATAGTTAAGTAGCTTTCTTGCTTTTTGTATTTTCCATAAAATAAATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTAAGTAGCTTTCTTGCTTTTTGTATTTTCCATAAAATAAATAC  981

seq1  ATTTTCCAACCTCTGTAGAATTAGAGATCTTTATAAATGTGAAGTTTAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAACCTCTGTAGAATTAGAGATCTTTATAAATGTGAAGTTTAGT  1031

seq1  GTGGGGAAATATAAGGATTTAAAGCAATTGTGAAGAGGTATGTACAACTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAATATAAGGATTTAAAGCAATTGTGAAGAGGTATGTACAACTG  1081

seq1  TATTTTATGATAAGTAAGCTATGAAAGGAAATACCTAGATGAAAGCCATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGATAAGTAAGCTATGAAAGGAAATACCTAGATGAAAGCCATT  1131

seq1  GTTTATGCAGAGAAAAGAATTC  1172
      ||||||||||||||||||||||
seq2  GTTTATGCAGAGAAAAGAATTC  1153

seq1: chrY_1870346_1870571
seq2: B6Ng01-134P04.g_238_463

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | | ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGCATCAAAAGATGGCCTAGTCGGCCATCACTCGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||| |||||||||||||||| |||||||||||||||||||||||| ||
seq2  GGACACGCAAACTTTATATGCCTCAGTACAGGGGAACGCCAGGGCCATAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTG  226
      | ||| |||||||||||||||||| |
seq2  AAGGGGAGTGGGTGGGTAGGGGAGAG  226