BAC Information

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BAC

Clone NameB6Ng01-135O09
Chromosome17 (Build37)Y (Build37)
Map Location 37,067,168 - 37,068,1791,870,346 - 1,870,485
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31
Downstream genePpp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135O09.bB6Ng01-135O09.g
ACCDH935822DH935823
length1,011500
definitionDH935822|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O09, 5' end.DH935823|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,067,168 - 37,068,179)(1,870,346 - 1,870,485)
sequence
gaattcattctttctggagcagaggagacccgtagatctctggggctgac
tggctgaccaactaactttcttgtcaagcaagctctagcccaataagaga
ctttgtttcaaaaaaacaagatgactttgtttcaaaataagggactttgt
ttcaaagacaagctcctgagaaatgacagctaaggtggagcgctcgcacg
cgcgcgcacacacacgcacacacacacacacacacacacacacacaggaa
aaaagctggacttggacttgatgacccatacttttaatgtcagcacttga
aagagaggcaggctagctagggctacatagagaaatcttgtatcacaaaa
caaattttaaaaaagagagatttatctctcccccccaccccaccccccta
ctatagcagcgtctgttaaagggtgagaatagatatcatcctgtcccacc
accaccaccaccaccaccaccatcaccaccaccaccactaccaccactac
ccactttaagggcctggtctcattgtagccaaggctggccttgaactatt
gattctgttaccttcattcctcaagtgctggcattataggtctgtgctac
catgccgggttcctcccccaccaagcagtctaagacatgttgccttccaa
agacttagctacttgtcaagaaatgatgtgatataagcgagcaaaacaga
taggggtgtggcccagggctagagggcttctttgggggggggagcagttt
agaaaagcttcacagaggaagtctgggaaagggaaatgcaccagaggaca
gtgggaggaggcaggagagagcctgtcaggccaaagccaggaagcagagt
gtgtgggagaactgggtacgtacaaagaaaacaaaagagggcgtgaaggg
agctgggaaagagaatctacaaagtaattcggagacagtacattaaattt
atgacctattcaaaaatcatcgagagctggtgtgtgtgtatgtgttgtgt
gtgtgtgtgtg
gaattcagtgaccaaaattacaagtatctctttgagggctaagaatttat
tcgttacgaagaccaaagtgtggacactttgccccttcttagaaatggga
actaaacacccattgaaggagttacagagacaaaatttggagctgtgacg
aaaggatggaccatctagtgattgccatatgcagggatccatcccataat
cagctcccaaacgctgacaccattgcatacactagcaagattttgctgat
aggacccagatatagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggattctcacagtcagctattggatgggtcacacggccccc
aatggaggagctagagaaattacccaaggagctaaagggaactgcaaccc
tataggtggaacaacattatgaactaaccagtaccctggagctcttgact
ctagctgcatatctatcaaaagacggcctagttggccatcactgcaaaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37067168_37068179
seq2: B6Ng01-135O09.b_49_1059 (reverse)

seq1  CACACACACACACACACACACATACACACACACCAGCTCTCGATGATTTT  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACACACACACACACA-ACACATACACACACACCAGCTCTCGATGATTTT  49

seq1  TGAATAGGTCATAAATTTAATGTTACTGTCTCCGAATTACTTTTGTAGAT  100
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TGAATAGGTCATAAATTTAATG-TACTGTCTCCGAATTAC-TTTGTAGAT  97

seq1  TCTCTTT-CCAGCTCCCTTCACGCCCTCTTTTGTTTTCTTTGTACGTACC  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCCAGCTCCCTTCACGCCCTCTTTTGTTTTCTTTGTACGTACC  147

seq1  CAGTTCTCCCACACACTCTGCTTCCTGGCTTTGGCCTGACAGGCTCTCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCCCACACACTCTGCTTCCTGGCTTTGGCCTGACAGGCTCTCTC  197

seq1  CTGCCTCCTCCCACTGTCCTCTGGTGCATTTCCCTTTCCCAGACTTCCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTCCCACTGTCCTCTGGTGCATTTCCCTTTCCCAGACTTCCTC  247

seq1  TGTGAAGCTTTTCTAAACTGCT-CCCCCCCCAAAGAAGCCCTCTAGCCCT  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGAAGCTTTTCTAAACTGCTCCCCCCCCCAAAGAAGCCCTCTAGCCCT  297

seq1  GGGCCACACCCCTATCTGTTTTGCTCGCTTATATCACATCATTTCTTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACACCCCTATCTGTTTTGCTCGCTTATATCACATCATTTCTTGAC  347

seq1  AAGTAGCTAAGTCTTTGGAAGGCAACATGTCTTAGACTGCTTGGTGGGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTAAGTCTTTGGAAGGCAACATGTCTTAGACTGCTTGGTGGGGG  397

seq1  AGGAACCCGGCATGGTAGCACAGACCTATAATGCCAGCACTTGAGGAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCCGGCATGGTAGCACAGACCTATAATGCCAGCACTTGAGGAATG  447

seq1  AAGGTAACAGAATCAATAGTTCAAGGCCAGCCTTGGCTACAATGAGACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAACAGAATCAATAGTTCAAGGCCAGCCTTGGCTACAATGAGACCA  497

seq1  GGCCCTTAAAGTGGGTAGTGGTGGTAGTGGTGGTGGTGGTGATGGTGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTAAAGTGGGTAGTGGTGGTAGTGGTGGTGGTGGTGATGGTGGTG  547

seq1  GTGGTGGTGGTGGTGGTGGGACAGGATGATATCTATTCTCACCCTTTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGGTGGTGGTGGGACAGGATGATATCTATTCTCACCCTTTAAC  597

seq1  AGACGCTGCTATAGTAGGGGGGTGGGGTGGGGGGGAGAGATAAATCTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCTGCTATAGTAGGGGGGTGGGGTGGGGGGGAGAGATAAATCTCTC  647

seq1  TTTTTTAAAATTTGTTTTGTGATACAAGATTTCTCTATGTAGCCCTAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAATTTGTTTTGTGATACAAGATTTCTCTATGTAGCCCTAGCT  697

seq1  AGCCTGCCTCTCTTTCAAGTGCTGACATTAAAAGTATGGGTCATCAAGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCTCTCTTTCAAGTGCTGACATTAAAAGTATGGGTCATCAAGTC  747

seq1  CAAGTCCAGCTTTTTTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCAGCTTTTTTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG  797

seq1  TGTGTGTGCGCGCGCGTGCGAGCGCTCCACCTTAGCTGTCATTTCTCAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCGCGCGCGTGCGAGCGCTCCACCTTAGCTGTCATTTCTCAGG  847

seq1  AGCTTGTCTTTGAAACAAAGTCCCTTATTTTGAAACAAAGTCATCTTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCTTTGAAACAAAGTCCCTTATTTTGAAACAAAGTCATCTTGTT  897

seq1  TTTTTGAAACAAAGTCTCTTATTGGGCTAGAGCTTGCTTGACAAGAAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAACAAAGTCTCTTATTGGGCTAGAGCTTGCTTGACAAGAAAGT  947

seq1  TAGTTGGTCAGCCAGTCAGCCCCAGAGATCTACGGGTCTCCTCTGCTCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTCAGCCAGTCAGCCCCAGAGATCTACGGGTCTCCTCTGCTCCA  997

seq1  GAAAGAATGAATTC  1012
      ||||||||||||||
seq2  GAAAGAATGAATTC  1011

seq1: chrY_1870346_1870485
seq2: B6Ng01-135O09.g_431_570

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  CTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||  |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGA  140
      |  |||||||||| |||||||| ||||||||||| |||||
seq2  ATCTATCAAAAGACGGCCTAGTTGGCCATCACTGCAAAGA  140