BAC Information

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BAC

Clone NameB6Ng01-136B08
ChromosomeY (Build37)3 (Build37)
Map Location 1,870,346 - 1,870,47673,527,272 - 73,528,400
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136B08.bB6Ng01-136B08.g
ACCDH935958DH935959
length5001,115
definitionDH935958|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B08, 5' end.DH935959|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,476)(73,527,272 - 73,528,400)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttgtggacactatgcccctcctga
gaagtgggaacaaaacaccattggaaggagttacagagacaaagtttgga
gctgagatgaaaggatggaccatgtagagactgccatatccagggatcca
ccccataatcagcatccaaacgctgacaccattgcatacactagcaagat
tttattgaaaggacccagatgtagctgtctcttgtgagactatgccgggg
cctagcaaacacagaagtggatgctcacagtcagctaatgggtggatcac
agggctcccaatggaggagctagagaaagtacctaaggagctaaagagat
ctgcaaccctataggtggaacaacattatgaactaaccagtaccccggag
ctcctgactctagctgcatatgtatcaaaagatggcctagtcggccatca

gaattcaagagaagagacaacctacagaatggggaaaacatctacagtgt
acaaagaacactcaaactgaaaacaaacaaaacagcatcagacagcgcag
tggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggttga
tttctgagtttgaggccagcctggtctacagagtgagttccaggacagcc
agggctacacagagaaacccggtcaaaacaaacaaacaaacaaacaaaaa
accaaccaaccaaccaaacaaacaaacaaaaaaaccccagcatcaggaaa
ataatttaattataaaagcagaggatggctcaatggacacatccatagca
taggccttgcatttatggcttagggaagtggaaacagaaagggtgaaaga
gtcaaaataacataatgtataatgtgaaacagcctttcatataaacggca
tcatgaaagatctgaacaatggcagtatcaataatccttctaacatggaa
tgaaattttttcagggtattccacttctagagaaataactatagataatt
gattactactaagactggaagaattgacctcttccagaggtgaggcccca
aattactctcagatataaattgagcacaactatatcttgtactttgtata
tttcaaaatggtaatagttgtgctcagtttatatctgagaaaatagccct
ttaattggacaaaaaggaggaaactcttggtactgcttgtattttgatgt
taattccgctttcccaggaggagttgctttggatgaggagcaaatcatgt
actcaggtgatttcttgtgaaccttcccctaatgaataaagattgcaagg
aaccaatcactgggtgtgtaggtggggattccaggtcagaaaaggaatgg
gggtagggggggagaggaaacttgcctggttgatgggagcatggagcaaa
atgtagacagcagaggcctttgtacagggggtgcatcttgtgggatctcc
taccagaagatttataggatggatacaataagatgctacttggctgccct
catgattgagtacctattgatttcaccaggatgtggggatttccttcctc
gaggcacaccagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870476
seq2: B6Ng01-136B08.b_417_547

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  CTAGAGAAAGTACCTAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||| ||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCCTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCA  131
      | |||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCA  131

seq1: chr3_73527272_73528400
seq2: B6Ng01-136B08.g_67_1181

seq1  GAATTCAAGAGAAGAGACAACCTACAGAATGGGGAAAACATCTACAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAAGAGACAACCTACAGAATGGGGAAAACATCTACAGTGT  50

seq1  ACAAAGAACACTCAAACTGAAAACAAACAAAACAGCATCAGACAGCGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACACTCAAACTGAAAACAAACAAAACAGCATCAGACAGCGCAG  100

seq1  TGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTTGA  150

seq1  TTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  200

seq1  AGGGCTACACAGAGAAACCCGGTCAAAACAAACAAACAAACAAACAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGAGAAACCCGGTCAAAACAAACAAACAAACAAACAAAAA  250

seq1  ACCAACCAACCAACCAAACAAACAAACAAAAAAACCCCAGCATCAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAACCAACCAAACAAACAAACAAAAAAACCCCAGCATCAGGAAA  300

seq1  ATAATTTAATTATAAAAGCAGAGGATGGCTCAATGGACACATCCATAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAATTATAAAAGCAGAGGATGGCTCAATGGACACATCCATAGCA  350

seq1  TAGGCCTTGCATTTATGGCTTAGGGAAGTGGAAACAGAAAGGGTGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTGCATTTATGGCTTAGGGAAGTGGAAACAGAAAGGGTGAAAGA  400

seq1  GTCAAAATAACATAATGTATAATGTGAAACAGCCTTTCATATAAACGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATAACATAATGTATAATGTGAAACAGCCTTTCATATAAACGGCA  450

seq1  TCATGAAAGATCTGAACAATGGCAGTATCAATAATCCTTCTAACATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAAGATCTGAACAATGGCAGTATCAATAATCCTTCTAACATGGAA  500

seq1  TGAAATTTTTTCAGGGTATTCCACTTCTAGAGAAATAACTATAGATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTTTTCAGGGTATTCCACTTCTAGAGAAATAACTATAGATAATT  550

seq1  GATTACTACTAAGACTGGAAGAATTGACCTCTTCCAGAGGTGAGGCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTACTAAGACTGGAAGAATTGACCTCTTCCAGAGGTGAGGCCCCA  600

seq1  AATTACTCTCAGATATAAATTGAGCACAACTATATCTTGTACTTTGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCTCAGATATAAATTGAGCACAACTATATCTTGTACTTTGTATA  650

seq1  TTTCAAAATGGTAATAGTTGTGCTCAGTTTATATCTGAGAAAATAGCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATGGTAATAGTTGTGCTCAGTTTATATCTGAGAAAATAGCCCT  700

seq1  TTAATTGGACAAAAAGGAGGAAACTCTTGGTACTGCTTGTATTTTGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGACAAAAAGGAGGAAACTCTTGGTACTGCTTGTATTTTGATGT  750

seq1  TAATTCCGCTTTCCCAGGAGGAGTTGCTTTGGATGAGGAGCAAATCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCGCTTTCCCAGGAGGAGTTGCTTTGGATGAGGAGCAAATCATGT  800

seq1  ACTCAGGTGATTTCTTGTGAACCTTCCCCTAATGAATAAAGATTGCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTGATTTCTTGTGAACCTTCCCCTAATGAATAAAGATTGCAAGG  850

seq1  AACCAATCACTGGGTGTGTAGGTGGGGATTCCAGGTCAGAAAAGGAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCACTGGGTGTGTAGGTGGGGATTCCAGGTCAGAAAAGGAATGG  900

seq1  GGGTA-GGAGGGAGAGGAAACTTGCCTGGTGGATGGGAGCATGGAGGCAA  949
      ||||| || ||||||||||||||||||||| |||||||||||||||   |
seq2  GGGTAGGGGGGGAGAGGAAACTTGCCTGGTTGATGGGAGCATGGAG--CA  948

seq1  AAATGTAGACAGCAGAGGCCCTCGGTACAGGGGGTGCATCTGTTGGGATC  999
      |||||||||||||||||| |||  |||||||||||||||||  |||||||
seq2  AAATGTAGACAGCAGAGG-CCTTTGTACAGGGGGTGCATCTTGTGGGATC  997

seq1  TCCTACCAGAAGATTTAATTTAGAATGGATTACAAATTAGGATGCTACTT  1049
      |||||||||||||||||   ||| ||||| |||||  || ||||||||||
seq2  TCCTACCAGAAGATTTA---TAGGATGGA-TACAA--TAAGATGCTACTT  1041

seq1  -GCTGCCCTCATGATTGAGTTACCTATTGATTCTAAACAAGATCGTGTGG  1098
       |||||||||||||||||| |||||||||||| | | || ||   |||||
seq2  GGCTGCCCTCATGATTGAG-TACCTATTGATT-TCACCAGGA---TGTGG  1086

seq1  TATTTTCCTTCACGCAGAGGCACAACAGGGT  1129
         |||||||| | | |||||||| ||||||
seq2  GGATTTCCTTC-CTC-GAGGCACACCAGGGT  1115