BAC Information

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BAC

Clone NameB6Ng01-137K02
ChromosomeX (Build37)Y (Build37)
Map Location 42,070,084 - 42,071,2791,120,586 - 1,120,725
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c
Downstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038, EG385346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137K02.bB6Ng01-137K02.g
ACCDH937101DH937102
length1,182593
definitionDH937101|Mus musculus domesticus DNA, BAC clone: B6Ng01-137K02, 5' end.DH937102|Mus musculus domesticus DNA, BAC clone: B6Ng01-137K02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,070,084 - 42,071,279)(1,120,586 - 1,120,725)
sequence
gaattcacagtgcttgcagcagcatgcacaaaacctgagcaagtaaaagc
caggccaacttccatcatggagatgggaactgagcacacaattcaaccat
caggtatagagatactaccataatatattaaaggtagaataagtaggttg
cataagtatgtactacaattttcctccctataatttcctgccaagatgga
tcatgctttgaactgtgacctttagtaattcctttgtcatttatattgct
tttgatataaattttaacaaggcaacagaaaaagaaaaaaactaaaagag
aaatgttttcatttgaagtgagattaacattttggtatcttagttttctg
tattttctttaataatgtcaaaattcttacacaaaatgaacacacaccca
agcccaaatacttcttgaagctttacaatattcattatttaggattacag
ttgccccaacactttagggataatagtactcatcacaaaggattaggttt
tgattcctacatggcttacagctacttgtatgtagtttcagtctaaataa
tacatttcctatgatgtccatgggcacatgtattcatgtattcataccta
cccctcccaaacacatacagaaaatatgtgttaacaataagtgcattact
aactaatcaatcaaaaatctattcttgtatatatctttgtttttttgaat
tattttatactaatcttttgtttcaacacaaggtttctccatcctacgtc
tactaacttcaatgaaattctacaaatacatccaacatcacctttttaat
gatattattcctttttttccatgtgcttccttaagtattatgtcatcaat
ggaatactttcttactatgttttggcagttgcattttggatttttctact
cagttacgtaagcagtgaggttttgaactcatttgaattttttttatagt
agtacacttagctgttacacagaatatatatttacttatacatttgataa
cttttttcagattatgataatttatatttcattgaatttcaaggtatttt
aaatgcgtgatgaaacattcgtcttttatttccaaatattgtgtttggta
tcattattaatactcgaattctatttacttagaatatgtatgaatgaaaa
cttaagcctaggctgacaactgcattattcat
gaattcaagagtcagaaatgaacctatacatctatagtttctttatcttt
gacaaaggagataaaaccatcctgtggaaaaaagacagcattttcaacaa
atggtgctggctcaactggtggttatcatgtagaagaatgcaaatttatc
cattcttatctccttgtacaaagctcaagtccaattgaatcaaggatcta
cataaaaaaacaagatactcagaaactaatagaagaaaaagtgggaaaga
gcttcgaacacatgggcacagagtaaattttcctgaacagaacaccaata
atatatgctctaatatcaagaatcagcaaatgggacctcataaaattgca
aaatttcttttttttttttccattttttattaggtatttaactcatttac
atttccaatgctataccaaaagtcccccatatccacccacccccactccc
ctgcccacccactccccctttttggccctgtaattcccctgtactggggc
atataaagtttgcttgtcctatgggcctctctttcctgtgatggccgact
aggccatctttttgatatatatgcagctagagtcatgagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42070084_42071279
seq2: B6Ng01-137K02.b_43_1224 (reverse)

seq1  ATGAATAATATGCAGTTCTGTCAGCTAAGCTTTAATGTTTTCATTCATAC  50
      |||||||  |||||||  |||||||  ||  |||| ||||||||||||||
seq2  ATGAATA--ATGCAGT--TGTCAGCCTAGGCTTAA-GTTTTCATTCATAC  45

seq1  ATATTCTAAGTATATAGAATTCTGAGTATTATATATGATACCAAACACAA  100
      |||||||||||| ||||||||| ||||||||   |||||||||||||| |
seq2  ATATTCTAAGTAAATAGAATTC-GAGTATTAATAATGATACCAAACAC-A  93

seq1  ATATTTGGGAAATAAAAGACGAATGTTTCAATCACGCATTTTAAAATTAC  150
      |||||| |||||||||||||||||||||| |||||||||||  ||| |||
seq2  ATATTT-GGAAATAAAAGACGAATGTTTC-ATCACGCATTT--AAAATAC  139

seq1  CCTTGAATTCAATGAAATATAAATTTATCATAATCTTGAAAAAGTTAATC  200
      | |  |||||||||||||||||| ||||||||||||  |||||||| |||
seq2  CTTGAAATTCAATGAAATATAAA-TTATCATAATCTGAAAAAAGTT-ATC  187

seq1  AAATGTATTAAGTAAATATATATTCTGTGTAACAGCTAAGTGTACTACTA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTA-TAAGTAAATATATATTCTGTGTAACAGCTAAGTGTACTACTA  236

seq1  TAAAAAAAATTCAAATGAGTTCAAAACCTCACTGCTTACGTAACTGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATTCAAATGAGTTCAAAACCTCACTGCTTACGTAACTGAGTA  286

seq1  GAAAGATCCAAAATGCAACTGCCAAAACATAGTAAGAAAGTATTCCATTG  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCCAAAATGCAACTGCCAAAACATAGTAAGAAAGTATTCCATTG  336

seq1  ATGACATAATACTTAAGGAAGCACATGGAAAAAAAGGAATAATATCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATAATACTTAAGGAAGCACATGGAAAAAAAGGAATAATATCATTA  386

seq1  AAAAGGTGATGTTGGATGTATTTGTAGAATTTCATTGAAGTTAGTAGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGATGTTGGATGTATTTGTAGAATTTCATTGAAGTTAGTAGACG  436

seq1  TAGGATGGAGAAACCTTGTGTTGAAACAAAAGATTAGTATAAAATAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGGAGAAACCTTGTGTTGAAACAAAAGATTAGTATAAAATAATTC  486

seq1  AAAAAAACAAAGATATATACAAGAATAGATTTTTGATTGATTAGTTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAGATATATACAAGAATAGATTTTTGATTGATTAGTTAGTA  536

seq1  ATGCACTTATTGTTAACACATATTTTCTGTATGTGTTTGGGAGGGGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTATTGTTAACACATATTTTCTGTATGTGTTTGGGAGGGGTAGG  586

seq1  TATGAATACATGAATACATGTGCCCATGGACATCATAGGAAATGTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATACATGAATACATGTGCCCATGGACATCATAGGAAATGTATTAT  636

seq1  TTAGACTGAAACTACATACAAGTAGCTGTAAGCCATGTAGGAATCAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGAAACTACATACAAGTAGCTGTAAGCCATGTAGGAATCAAAAC  686

seq1  CTAATCCTTTGTGATGAGTACTATTATCCCTAAAGTGTTGGGGCAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTTTGTGATGAGTACTATTATCCCTAAAGTGTTGGGGCAACTGT  736

seq1  AATCCTAAATAATGAATATTGTAAAGCTTCAAGAAGTATTTGGGCTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAAATAATGAATATTGTAAAGCTTCAAGAAGTATTTGGGCTTGGG  786

seq1  TGTGTGTTCATTTTGTGTAAGAATTTTGACATTATTAAAGAAAATACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCATTTTGTGTAAGAATTTTGACATTATTAAAGAAAATACAGA  836

seq1  AAACTAAGATACCAAAATGTTAATCTCACTTCAAATGAAAACATTTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGATACCAAAATGTTAATCTCACTTCAAATGAAAACATTTCTCT  886

seq1  TTTAGTTTTTTTCTTTTTCTGTTGCCTTGTTAAAATTTATATCAAAAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTTTTTCTTTTTCTGTTGCCTTGTTAAAATTTATATCAAAAGCA  936

seq1  ATATAAATGACAAAGGAATTACTAAAGGTCACAGTTCAAAGCATGATCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGACAAAGGAATTACTAAAGGTCACAGTTCAAAGCATGATCCA  986

seq1  TCTTGGCAGGAAATTATAGGGAGGAAAATTGTAGTACATACTTATGCAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCAGGAAATTATAGGGAGGAAAATTGTAGTACATACTTATGCAAC  1036

seq1  CTACTTATTCTACCTTTAATATATTATGGTAGTATCTCTATACCTGATGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATTCTACCTTTAATATATTATGGTAGTATCTCTATACCTGATGG  1086

seq1  TTGAATTGTGTGCTCAGTTCCCATCTCCATGATGGAAGTTGGCCTGGCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGTGTGCTCAGTTCCCATCTCCATGATGGAAGTTGGCCTGGCTT  1136

seq1  TTACTTGCTCAGGTTTTGTGCATGCTGCTGCAAGCACTGTGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCTCAGGTTTTGTGCATGCTGCTGCAAGCACTGTGAATTC  1182

seq1: chrY_1120586_1120725
seq2: B6Ng01-137K02.g_427_566

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGC  140
      ||||||||||||||||||||  ||||||||||||||||||
seq2  ACTCCCCCTTTTTGGCCCTGTAATTCCCCTGTACTGGGGC  140