BAC Information

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BAC

Clone NameB6Ng01-139B04
ChromosomeY (Build37)10 (Build37)
Map Location 1,120,708 - 1,121,08137,910,831 - 37,911,394
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139B04.bB6Ng01-139B04.g
ACCDH938152DH938153
length953977
definitionDH938152|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B04, 5' end.DH938153|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,708 - 1,121,081)(37,910,831 - 37,911,394)
sequence
gaattcccctgtactgaggcatataaagtttgcacaaccaatggacctct
ctttccactgatggctgactaggccatcttttgatacatatgcagctaga
gacaagagctccggggtactggttagttcatattgttgttccacctatag
ggttgcagatcccccccaactccttgggtactttctctagctcctccatt
gtgagccctgtgatccatccaatagctgactgttagcatccacttctgtg
tttgctaggctcctgtatagtctcacaagagacagctatatcagggtcct
ttcagcaaaatcttgctagtgtatgcaatggtgtcagtgtttggaggctg
attatgggatggatccctggatatggcagtctctagatggtgcatccttt
tgtctcagctccaaactttgtctctgtaactccttccatgggtgttttgt
tcccaattctaagaaggggcaaagtgttcacactttgattttctttcttc
ttgagtttcatgtgttttgcaaattgtatctcatatcttgggtattctaa
gtttctgggctaatatccacttatcagtgagtacatattgtgtgagttct
tttgtgattgtgttacctcactcaggatgatgctctccaggtccatccat
ttgcctaggaatttcataaattcattgtttttaatagctgagtagcactc
cattgtgtaaatgtacgacattttctgtatccattcctctgttgaagggc
atctgggttcttttcagcttctagctattataagtaaggctgctatgaac
atagtggagcatgtgtcctttcttaccagttggaacatcttctggatata
tgcccagcagaggtattgcgggatcctccggtagtactatgtccaatttt
ctgagaaccgccaaactgatttcaggcaggacagtttgcaaatcaagtgt
ttc
gaattcagtttttaaaggaagtgatccaaaagtattttggatcagagctt
ggtgtaacatgtccagtgtgggaggatgaggagacaggaattgttgtctt
gaggcatgatttcaacaggacctggtcatagtgctcacagcaggtcacaa
gatttcattttgcatttgagaaactgatttgtacagtttatgcaaggcag
tatgtgatcttagctctgtaaattttaagtcaatctgataactatggtta
gtggccacttgcagtaatacagattgtggtagtttgaatatgcttggccc
agggagtgacgtttaggaagtatgtatttgttggaagatgtgtgtcactg
tggggaaggtcaatgtgaccctcctcttaaccacctgggagccagttttc
tcctgtctgctgttgcgagctgtccagcagttcacatggacggggtacac
ctgagtggcaggccggcactaaaagaaagggaaactaggcaaacgagaga
gaaatggagccaagacaatattctgatcaagctcaaatgtttaatggcga
atgcacttataaaaaggtgggggaagcccattcccgccaattcatccttg
gagcctggaaccaactgcaggtgatgacttgcaggatactgcatagtctc
aggaatagctccagggcctctcagcaggtagcagtatcttgaagaggaac
agcaacagtgacagtggctaagcaatagagtgatctagggaggaaggctc
caccctaggtaatttccttagtgtcagcaaggtcaagttctggctcagcc
agcttcaggctgagggaaggttacaggcgtcctttgggttgaaggtgtag
aactctcaggatcttccagccctaacatctgcctgaatggtgccatgtcc
ccaccttggataatagactgaactctgaatctggaagtttaccccagtta
attgtgtccttataggagttgtaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120708_1121081
seq2: B6Ng01-139B04.b_49_423

seq1  ATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  50
      |||||||||||||| |||||||||||||||||   ||||||| |||||||
seq2  ATTCCCCTGTACTGAGGCATATAAAGTTTGCACAACCAATGGACCTCTCT  50

seq1  TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100
      ||||| ||||||| |||||||||||||||||||| |||||||||||||| 
seq2  TTCCACTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGCTAGAGA  100

seq1  CAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGG  150
      |||||||||||||||||||||||| |||||  ||||||||||||||||||
seq2  CAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGG  150

seq1  TTGGAGAT-CCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGG  199
      ||| |||| |||   | |||||||| ||||||||||||||||||||||| 
seq2  TTGCAGATCCCCCCCAACTCCTTGGGTACTTTCTCTAGCTCCTCCATTGT  200

seq1  GAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTT  249
      ||||||| ||||||||||| ||||||||||| ||||||||||||||||||
seq2  GAGCCCTGTGATCCATCCAATAGCTGACTGTTAGCATCCACTTCTGTGTT  250

seq1  TGCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTT  299
      |||| ||| || | |||||||||||||||||||||| ||| |  ||||||
seq2  TGCTAGGCTCCTGTATAGTCTCACAAGAGACAGCTATATCAGGGTCCTTT  300

seq1  CAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGAT  349
      ||  ||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  CAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGTGTTTGGAGGCTGAT  350

seq1  TATGGGGTGGATCCCTGGCTATGGC  374
      |||||| ||||||||||| ||||||
seq2  TATGGGATGGATCCCTGGATATGGC  375

seq1: chr10_37910831_37911394
seq2: B6Ng01-139B04.g_68_631 (reverse)

seq1  TTTTATAAGTGCATTCGCCATTAAACATTTGAGCTTGATCAGAATATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGTGCATTCGCCATTAAACATTTGAGCTTGATCAGAATATTGT  50

seq1  CTTGGCTCCATTTCTCTCTCGTTTGCCTAGTTTCCCTTTCTTTTAGTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCCATTTCTCTCTCGTTTGCCTAGTTTCCCTTTCTTTTAGTGCC  100

seq1  GGCCTGCCACTCAGGTGTACCCCGTCCATGTGAACTGCTGGACAGCTCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCACTCAGGTGTACCCCGTCCATGTGAACTGCTGGACAGCTCGC  150

seq1  AACAGCAGACAGGAGAAAACTGGCTCCCAGGTGGTTAAGAGGAGGGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGACAGGAGAAAACTGGCTCCCAGGTGGTTAAGAGGAGGGTCAC  200

seq1  ATTGACCTTCCCCACAGTGACACACATCTTCCAACAAATACATACTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTTCCCCACAGTGACACACATCTTCCAACAAATACATACTTCCT  250

seq1  AAACGTCACTCCCTGGGCCAAGCATATTCAAACTACCACAATCTGTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCACTCCCTGGGCCAAGCATATTCAAACTACCACAATCTGTATTA  300

seq1  CTGCAAGTGGCCACTAACCATAGTTATCAGATTGACTTAAAATTTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTGGCCACTAACCATAGTTATCAGATTGACTTAAAATTTACAGA  350

seq1  GCTAAGATCACATACTGCCTTGCATAAACTGTACAAATCAGTTTCTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATCACATACTGCCTTGCATAAACTGTACAAATCAGTTTCTCAAA  400

seq1  TGCAAAATGAAATCTTGTGACCTGCTGTGAGCACTATGACCAGGTCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATGAAATCTTGTGACCTGCTGTGAGCACTATGACCAGGTCCTGT  450

seq1  TGAAATCATGCCTCAAGACAACAATTCCTGTCTCCTCATCCTCCCACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCATGCCTCAAGACAACAATTCCTGTCTCCTCATCCTCCCACACT  500

seq1  GGACATGTTACACCAAGCTCTGATCCAAAATACTTTTGGATCACTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGTTACACCAAGCTCTGATCCAAAATACTTTTGGATCACTTCCTT  550

seq1  TAAAAACTGAATTC  564
      ||||||||||||||
seq2  TAAAAACTGAATTC  564