BAC Information

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BAC

Clone NameB6Ng01-139C06
Chromosome8 (Build37)Y (Build37)
Map Location 68,442,615 - 68,443,6941,870,346 - 1,870,520
singlet/doubletsingletsinglet
Overlap geneMarch1
Upstream gene3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C06.bB6Ng01-139C06.g
ACCDH938204DH938205
length1,073494
definitionDH938204|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C06, 5' end.DH938205|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,442,615 - 68,443,694)(1,870,346 - 1,870,520)
sequence
gaattcattatttaatttaattttgtagaactttgaattgaacctcaggt
tataatctatactgaacaagtactctaccactgaactgtgtacccagtcc
ttaactggtttaccagttgtgagaagattgcagttgtttttttaaagaca
acattggaagctaaatggctcaaaaaacaaagcaaaatattaattataga
atctgggtttcttagttcatcttctagtgctgtgaagagacaccacaacc
acagcacctgattctaaaccacaactttctaaaggaaatcacttaactgg
gggggcttgcttatggtttcagaggttagtccattatcagcatggcagaa
agcatagaggcacataaacagacatggtgctagagatggagttgagtctt
ctacatctggatccacatgctgcatgaagagagagtgatactggtcctgg
cttgagcttctgaaatctcagagcccaatctctgtcacacactattacta
atgagcaatatctattctagtaagaccacacctcacaatagtgccactcc
ctggtgatgagcttgtgggactactgaatgtgatcaagctatcttttttt
ttctttcccatttttattaggtatttagctcatttacatttccaatgcta
taccaaaagtcccccatacccacccacccccactcccctacccacccact
ccccctttttggccctggcgttctcctgtactggggcatataaagtttgc
gtgtccaatgggcctctctttccagtgatggccgactaggccatcttttg
atacatatgcagctagagtcaagagctccggggtactggttagttcataa
tgttgttccacctatagggttgcagatccctttagctcttgggtactttc
tctagctcctccatgggagccctgtgatcattcattagctgactatgagc
atcacttctgtgtttgctaggccccggcatagtctcacaagaaaacagct
acatctggtctttcataaaatcttgctagtgaatgcaatggtgtcatcgt
ttgaatgctgattatgggtggat
ttcttccagaaactttctgggtttactcatcttttctctcaacctctcct
cacacagtgcaaagcatttccttgtacttataaatggagtgctgaaggag
tgtctgagaagtgcctaggctccttcccttgcagtgactacctaccgtac
tgctcaccctgaagaggaaaataagacaccattgcatacactagcaagcg
ctggctgaaaggacccagatatagctgtctcttgtgagactatgctgggg
cctagcaaacacgtaagtggatgctcacagtcagctattggatggatcac
agggcccccaatggaggagctagagaaagtatccaaggagctaaagagat
ctgcaaccctgtaggtgcaacaacattatgaactaaccagtaccccggag
ctcttgactctagctgcatatgtatcaaaagatggcctagtcggccatca
ctggaaagagaggcccattggacttgcaaactttatttgcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_68442615_68443694
seq2: B6Ng01-139C06.b_46_1118

seq1  GAATTCATTATTTAATTTAATTTTGTAGAACTTTGAATTGAACCTCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTAATTTAATTTTGTAGAACTTTGAATTGAACCTCAGGT  50

seq1  TATAATCTATACTGAACAAGTACTCTACCACTGAACTGTGTACCCAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTATACTGAACAAGTACTCTACCACTGAACTGTGTACCCAGTCC  100

seq1  TTAACTGGTTTACCAGTTGTGAGAAGATTGCAGTTGTTTTTTTAAAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGTTTACCAGTTGTGAGAAGATTGCAGTTGTTTTTTTAAAGACA  150

seq1  ACATTGGAAGCTAAATGGCTCAAAAAACAAAGCAAAATATTAATTATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGAAGCTAAATGGCTCAAAAAACAAAGCAAAATATTAATTATAGA  200

seq1  ATCTGGGTTTCTTAGTTCATCTTCTAGTGCTGTGAAGAGACACCACAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTTTCTTAGTTCATCTTCTAGTGCTGTGAAGAGACACCACAACC  250

seq1  ACAGCACCTGATTCTAAACCACAACTTTCTAAAGGAAATCACTTAACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCTGATTCTAAACCACAACTTTCTAAAGGAAATCACTTAACTGG  300

seq1  GGGGGCTTGCTTATGGTTTCAGAGGTTAGTCCATTATCAGCATGGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTTGCTTATGGTTTCAGAGGTTAGTCCATTATCAGCATGGCAGAA  350

seq1  AGCATAGAGGCACATAAACAGACATGGTGCTAGAGATGGAGTTGAGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAGGCACATAAACAGACATGGTGCTAGAGATGGAGTTGAGTCTT  400

seq1  CTACATCTGGATCCACATGCTGCATGAAGAGAGAGTGATACTGGTCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTGGATCCACATGCTGCATGAAGAGAGAGTGATACTGGTCCTGG  450

seq1  CTTGAGCTTCTGAAATCTCAGAGCCCAATCTCTGTCACACACTATTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTTCTGAAATCTCAGAGCCCAATCTCTGTCACACACTATTACTA  500

seq1  ATGAGCAATATCTATTCTAGTAAGACCACACCTCACAATAGTGCCACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAATATCTATTCTAGTAAGACCACACCTCACAATAGTGCCACTCC  550

seq1  CTGGTGATGAGCTTGTGGGACTACTGAATGTGATCAAGCTATCTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATGAGCTTGTGGGACTACTGAATGTGATCAAGCTATCTTTTTTT  600

seq1  TTCTTTCCCATTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCCATTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTA  650

seq1  TACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACCCACT  700

seq1  CCCCCTTTTTGGCCCTGGCGTTCTCCTGTACTGGGGCATATAAAGTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTTTGGCCCTGGCGTTCTCCTGTACTGGGGCATATAAAGTTTGC  750

seq1  GTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG  800

seq1  ATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAA  850

seq1  TGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCT-CTTGGGTACTTT  899

seq1  CTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTATG  950
      |||||||||||||| ||||||||||||||| ||| |||||||||||||||
seq2  CTCTAGCTCCTCCA-TGGGAGCCCTGTGAT-CATTCATTAGCTGACTATG  947

seq1  AGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAG-AGAC  999
      ||||| ||||||||||||||||||||||||||||||||||||||| | ||
seq2  AGCAT-CACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAAAAC  996

seq1  AGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGGATGCAATGGTG  1049
      ||||||||||||   ||||| ||||||||||||||||| |||||||||||
seq2  AGCTACATCTGG--TCTTTC-ATAAAATCTTGCTAGTGAATGCAATGGTG  1043

seq1  TCATCGTTTGGATGCTGATTATGGGGTGGAT  1080
      |||||||||| ||||||||||| ||||||||
seq2  TCATCGTTTGAATGCTGATTAT-GGGTGGAT  1073

seq1: chrY_1870346_1870520
seq2: B6Ng01-139C06.g_394_568

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| ||||||||||||| |||||| |
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCA  175
      |||| |||||||||||| |||||||
seq2  GGACTTGCAAACTTTATTTGCCCCA  175