BAC Information

Click to search

BAC

Clone NameB6Ng01-139D23
Chromosome6 (Build37)Y (Build37)
Map Location 18,835,442 - 18,835,9681,870,346 - 1,870,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139D23.bB6Ng01-139D23.g
ACCDH938282DH938283
length1,004457
definitionDH938282|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D23, 5' end.DH938283|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(1,870,346 - 1,870,575)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttttatcatac
agatctttcacttccttagttagagtcacgccgagatatttatattattt
gtgactattgagaaggtgtgtttccctaatttctttctcagcctgttatt
cttg
tgtcctattaaaaggagttacagagacaaaatttggagctgtgacgaaag
gatggaccatctagtgattgccatatgcagggatccatcccataatcagc
ttccaaatgctgacaccattgcatacactagcaagattttgctgaaagga
cccagatatagctctctcttgtgagactatgctggggcctagcaaacaca
gaagtggatgatcacagtcagctattggatgggtcacacggcccccaatg
gaggagctagagaaattacccaaggagctaaagggaactgcaaccctata
ggtagaacaacaatatgaactaaccagtacccgggagctcttgtctttag
ctgcatatgtatcaaaagatggcctagtcggccatcactgcaaggacttg
caaactttatatgccccagtacagggaaacgccagggccaaaaaggggga
gtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-139D23.b_36_563 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAACAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chrY_1870346_1870575
seq2: B6Ng01-139D23.g_329_529

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| |||||||||||||||||||| |||||||||||||||| ||
seq2  CTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTAGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| ||||||||||||| |||||  ||||||||| || | |||||||
seq2  ACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||||||||||||||| ||             
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAA-------------  137

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGAAACGCCAGGGCCAAAA  187

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
      ||||| |||||| |                
seq2  AGGGGGAGTGGGGG----------------  201