BAC Information

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BAC

Clone NameB6Ng01-140G21
ChromosomeY (Build37)12 (Build37)
Map Location 573,331 - 573,55392,033,248 - 92,034,367
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G21.bB6Ng01-140G21.g
ACCDH939163DH939164
length4291,117
definitionDH939163|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G21, 5' end.DH939164|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,331 - 573,553)(92,033,248 - 92,034,367)
sequence
tttgtttgtctctgagccccatttttaatggggttatttgattttctgga
gtccaccttcttgagttctttatatatattggatattagtcccctatctg
atttaagattggtaaagattctttcccaatctgttggtggcctttttgtc
ttattgaaggtgtcttttgccttacagaaactttgtaattttatgaagtc
ccatttagagaaagtacccaaggagctaaaggagtctgcaaccttatagg
tggaacaacaatatgaactaaccagtacccccagagctcttgtctctagc
tgcatatgtatcagaagatggcctagccggccatcattgggaagagaggc
cccttggtcttgcaaactttatatgcctcagtacgggggaatgccagggc
caagaagtgggagtgggtggggagggcag
gaattccttcttttgtatttatttttaatcagcctacaaagcattcttct
tgggaatcctcctccgagaatgcaattgctttgtctcactgtctagaatt
ccttcggatgttcattccagaattatcactggctaacagaaatggactgg
catgatggatttcgaataataaggagtctagggaaattctcatcttctct
aactttattttctactcatacaaaagaatcaaatcagcattatcttagca
aacatgatgatggcagtgtttgaagtcaatgaatattttaatgattccta
tttacctttaattgtttacatgaattgtcacctttgaataacttctggca
ctaaattgatatgattgatatttggaagcaacatttgcatattgggcccc
acagattttacacagttcatttgtgtatcatggtaacacagattcagaac
attgaatcgaaactgggctttatcaataaaataatacacgttttaccttc
cctcatttctcaataatttcatagattaaaatatcttattctatattttc
ttttttgtgatgctatagctaacttcagcattgctagcttagtttcttcg
acaaatatctgttatttctataaaaatataaagaagaaagaattccttgt
cttctcttgaaatactttttatctcatacaaggccactttgaacttttgg
tcagtctgtagtttcataaatggcctgccatctgttcataggattatcca
taatagcctttgggttcaaataagtgcatttattagcacataagaacaaa
agcaaaagaataaatagtaatcagcagataaatagaaagatcatccaatt
gggtatttacagcatttcagcagaaataactggggaagcttggttaacat
agtacagccagagtttctcaggtatagttctggacagaataaccattcca
catgtgatgcttgttcattcctaccacaagcactttggtatgctggataa
ataaatagtgaccttagttgaaatgggtattttgtagctgtctcaggtac
aatggttttagcattctttccttaattcatagatctgcacccaaacagtc
tgaagcacatgaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573331_573553
seq2: B6Ng01-140G21.b_257_480

seq1  TAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCTATAGATGGAA  50
      |||||||||||||||||||||||||||  ||||||| | ||||| |||||
seq2  TAGAGAAAGTACCCAAGGAGCTAAAGGAGTCTGCAACCTTATAGGTGGAA  50

seq1  CAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCTCTAGCTGCAT  99
      |||||||||||| ||||||||| || |||||||| |||||||||||||||
seq2  CAACAATATGAACTAACCAGTACCCCCAGAGCTCTTGTCTCTAGCTGCAT  100

seq1  ATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTT  149
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  ATGTATCAGAAGATGGCCTAGCCGGCCATCATTGGGAAGAGAGGCCCCTT  150

seq1  GGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGA  199
      |||||||||||||||||||||| |||||| ||||||  ||||||||||||
seq2  GGTCTTGCAAACTTTATATGCCTCAGTACGGGGGAATGCCAGGGCCAAGA  200

seq1  AGTGGGAGAAGGTGGGTAGGGTAG  223
      ||||||||  |||||| |||| ||
seq2  AGTGGGAGTGGGTGGGGAGGGCAG  224

seq1: chr12_92033248_92034367
seq2: B6Ng01-140G21.g_66_1182 (reverse)

seq1  TTATCTCATGTGCTTCAAGACTGTTTGTGCTGCAGAACTATGGAGTAAAG  50
      |||| ||||||||||| |||||||||| | |||||| ||||| | ||| |
seq2  TTATTTCATGTGCTTC-AGACTGTTTG-GGTGCAGATCTATGAATTAAGG  48

seq1  AGAAGAATGCTAAAAACAATGTACCCTTGAGAACAGCTACAAAATAACCC  100
      | ||||||||||||| || ||||||  |||| ||||||||||||| ||||
seq2  A-AAGAATGCTAAAACCATTGTACC--TGAG-ACAGCTACAAAAT-ACCC  93

seq1  ATTTCAACTAAGGTCACTA-TTATTTATTCCAGCATA-CAAAGTGCTTGT  148
      ||||||||||||||||||| ||||||| ||||||||| ||||||||||||
seq2  ATTTCAACTAAGGTCACTATTTATTTA-TCCAGCATACCAAAGTGCTTGT  142

seq1  GGTAGGAATG-ACAAGCATCACATGTGGATTGGTTATTCTGTCCAGAACT  197
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  GGTAGGAATGAACAAGCATCACATGTGGAATGGTTATTCTGTCCAGAACT  192

seq1  ATAACTG-GGGACTCTGGCTGTACTATGTTAACCAAGCTTCCCCAGTTGT  246
      ||| ||| |  ||||||||||||||||||||||||||||||||||||| |
seq2  ATACCTGAGAAACTCTGGCTGTACTATGTTAACCAAGCTTCCCCAGTTAT  242

seq1  TTCTGCTG-AATGCTGTAAATACCCAATTGGATGATC-TTCTATTTATCT  294
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  TTCTGCTGAAATGCTGTAAATACCCAATTGGATGATCTTTCTATTTATCT  292

seq1  GCTGATTACTATTTATTCTTTTGCTTTTGTTTCTTATGTGCTAATAAATG  344
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGATTACTATTTATTCTTTTGCTTTTG-TTCTTATGTGCTAATAAATG  341

seq1  CACTTATTTGAACCCAAAGGCTATTATGGATAATCCTATGAACAGATGGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTGAACCCAAAGGCTATTATGGATAATCCTATGAACAGATGGC  391

seq1  AGGCCATTTATGAAACTACAGACTGACCAAAAGTTCAAAGTGGCCTTGTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTTATGAAACTACAGACTGACCAAAAGTTCAAAGTGGCCTTGTA  441

seq1  TGAGATAAAAAGTATTTCAAGAGAAGACAAGGAATTCTTTCTTCTTTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAAAAGTATTTCAAGAGAAGACAAGGAATTCTTTCTTCTTTATA  491

seq1  TTTTTATAGAAATAACAGATATTTGTCGAAGAAACTAAGCTAGCAATGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAGAAATAACAGATATTTGTCGAAGAAACTAAGCTAGCAATGCT  541

seq1  GAAGTTAGCTATAGCATCACAAAAAAGAAAATATAGAATAAGATATTTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGCTATAGCATCACAAAAAAGAAAATATAGAATAAGATATTTTA  591

seq1  ATCTATGAAATTATTGAGAAATGAGGGAAGGTAAAACGTGTATTATTTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGAAATTATTGAGAAATGAGGGAAGGTAAAACGTGTATTATTTTA  641

seq1  TTGATAAAGCCCAGTTTCGATTCAATGTTCTGAATCTGTGTTACCATGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAGCCCAGTTTCGATTCAATGTTCTGAATCTGTGTTACCATGAT  691

seq1  ACACAAATGAACTGTGTAAAATCTGTGGGGCCCAATATGCAAATGTTGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGAACTGTGTAAAATCTGTGGGGCCCAATATGCAAATGTTGCT  741

seq1  TCCAAATATCAATCATATCAATTTAGTGCCAGAAGTTATTCAAAGGTGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATCAATCATATCAATTTAGTGCCAGAAGTTATTCAAAGGTGAC  791

seq1  AATTCATGTAAACAATTAAAGGTAAATAGGAATCATTAAAATATTCATTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTAAACAATTAAAGGTAAATAGGAATCATTAAAATATTCATTG  841

seq1  ACTTCAAACACTGCCATCATCATGTTTGCTAAGATAATGCTGATTTGATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACACTGCCATCATCATGTTTGCTAAGATAATGCTGATTTGATT  891

seq1  CTTTTGTATGAGTAGAAAATAAAGTTAGAGAAGATGAGAATTTCCCTAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTATGAGTAGAAAATAAAGTTAGAGAAGATGAGAATTTCCCTAGA  941

seq1  CTCCTTATTATTCGAAATCCATCATGCCAGTCCATTTCTGTTAGCCAGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATTATTCGAAATCCATCATGCCAGTCCATTTCTGTTAGCCAGTG  991

seq1  ATAATTCTGGAATGAACATCCGAAGGAATTCTAGACAGTGAGACAAAGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTGGAATGAACATCCGAAGGAATTCTAGACAGTGAGACAAAGCA  1041

seq1  ATTGCATTCTCGGAGGAGGATTCCCAAGAAGAATGCTTTGTAGGCTGATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTCTCGGAGGAGGATTCCCAAGAAGAATGCTTTGTAGGCTGATT  1091

seq1  AAAAATAAATACAAAAGAAGGAATTC  1120
      ||||||||||||||||||||||||||
seq2  AAAAATAAATACAAAAGAAGGAATTC  1117