BAC Information

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BAC

Clone NameB6Ng01-141D12
ChromosomeY (Build37)
Map Location 1,517,608 - 1,656,300
singlet/doubletdoublet
Overlap geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D12.bB6Ng01-141D12.g
ACCDH939730DH939731
length8341,152
definitionDH939730|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D12, 5' end.DH939731|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(1,517,608 - 1,518,444)(1,655,127 - 1,656,300)
sequence
gaattcagcatagcgacacactaggcacactattggcttatttaaacatt
atcagaaagattacatgtcagcaaaagggtatcaggactttgttcctgtg
ggctggtggcttatcttgttcacatagaaagttgatgtatgactttacct
tgcatcaaggggcagtagacagaggggaggttccggccaggtggtgttga
cccagacaagatagccctgcttgtccttgtagtttttcatttttacagtc
aagctgttcttaggaatgtcttaacaacagccctgtctgttctgctttgt
tcttggccccaggctgcaggctcatagacaactctgttacatgaatcaca
agttacaaaatctcattttccttcagaaggagtttcctgagagaaactgg
ctgctggccagggactttaaggtggaggctgctctgctctgggactggat
cttcgaggaagaggaagtacgaagagaggggtagggagtgcacactggca
ccaacattgttaacaatctggacctctgtggtggaggcctcaggagccat
tgggctgactgagcagggcttgttggtacggtggcccggtggaatagtac
agagaaaggattcggatcagattaaggggctcaggttgatgtccttgtcc
tgggttcaggggcaacaggcaggtaggcagtggtttctcatagctgtgta
gtcagaattggggagcgagggggtggggaggagaggcttgacccaaggca
gggttaggcgggcctccagccttgtttcttcagtctttctatccagggac
tcccccttttgtgacctctgtttataaattgttt
gaattcaaacaagtttggaccctatgaaagtaatagattgcccaaatgct
cctggactgagaatcttggggaactgctagggattttcttaatctgcaat
ggcatttagatattggagcaagtggagatgctttgctccttcttttaggc
actcagatttgtcttggaagacaaactttgtgagcatttgagagggtttg
ctggaggagaagggatattgacagtgctctaaccaaactgcatggcacac
agctagactttgttccctctgtagcatagaattttctgatggtgttgcat
gatccttgctgaggacaggatctgaggcaagtttccaggtagaaaactgt
agtgcagttatacaaggtagcaaatataaaccattaatcgtgagcctgaa
gctgagagcactgagacattggacctaatgcataattgctgagacacttt
gaagacattttgtttgttttgaattctctgtataggtatgaatacattgt
cccatgggaagagggagtgtggcatccctgtggtcactgaagtagacgga
gttgtaaagagccaatggaagagtggcaagtccaagtgtatgctgtgtat
gtgctggcggtgtccagaaagtctgatcaatccctccagattcaataaga
catttaaaaaggaaaaccacaagagaaaacataaggggaatattttcatt
tttaatgacacatttttaatttgtttctactgatttatataacatttgcc
atattgtgtgtctagttcttttactcatggtttcattgttcctttaaagg
tgtcttgattattattctcagagacaggatttacaatcagacattcactt
attttttgcttaccaattcctctccttttttctgttttcttttctgggac
tgcatttctggatagtcctagtttttctatgctttctgtgcagttcagca
aagatcatcactatctggttttgattctcataatcctgagataaatccct
ctctagcagacatcacacctttttaattactgtcttacagatattcccag
aacatgttatcatcagttcccagcaaatcctcaacatttctacttattaa
agcacttccagctatgtgccacactagtcgacctgtctttagcgctcata
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1517608_1518444
seq2: B6Ng01-141D12.b_46_879

seq1  GAATTCAGCATAGCGACACACTAGGCACACTATTGGCTTATTTAAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGCGACACACTAGGCACACTATTGGCTTATTTAAACATT  50

seq1  ATCAGAAAGATTACATGTCAGCAAAAGGGTATCAGGACTTTGTTCCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAGATTACATGTCAGCAAAAGGGTATCAGGACTTTGTTCCTGTG  100

seq1  GGCTGGTGGCTTATCTTGTTCACATAGAAAGTTGATGTATGACTTTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGGCTTATCTTGTTCACATAGAAAGTTGATGTATGACTTTACCT  150

seq1  TGCATCAAGGGGCAGTAGACAGAGGGGAGGTTCCGGCCAGGTGGTGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAAGGGGCAGTAGACAGAGGGGAGGTTCCGGCCAGGTGGTGTTGA  200

seq1  CCCAGACAAGATAGCCCTGCTTGTCCTTGTAGTTTTTCATTTTTACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAAGATAGCCCTGCTTGTCCTTGTAGTTTTTCATTTTTACAGTC  250

seq1  AAGCTGTTCTTAGGAATGTCTTAACAACAGCCCTGTCTGTTCTGCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTCTTAGGAATGTCTTAACAACAGCCCTGTCTGTTCTGCTTTGT  300

seq1  TCTTGGCCCCAGGCTGCAGGCTCATAGACAACTCTGTTACATGAATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCCCAGGCTGCAGGCTCATAGACAACTCTGTTACATGAATCACA  350

seq1  AGTTACAAAATCTCATTTTCCTTCAGAAGGAGTTTCCTGAGAGAAACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAAATCTCATTTTCCTTCAGAAGGAGTTTCCTGAGAGAAACTGG  400

seq1  CTGCTGGCCAGGGACTTTAAGGTGGAGGCTGCTCTGCTCTGGGACTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCCAGGGACTTTAAGGTGGAGGCTGCTCTGCTCTGGGACTGGAT  450

seq1  CTTCGAGGAAGAGGAAGTACGAAGAGAGGGGTAGGGAGTGCACACTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAGGAAGAGGAAGTACGAAGAGAGGGGTAGGGAGTGCACACTGGCA  500

seq1  CCAACATTGTTAACAATCTGGACCTCTGTGGTGGAGGCCTCAGGAGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATTGTTAACAATCTGGACCTCTGTGGTGGAGGCCTCAGGAGCCAT  550

seq1  TGGGCTGACTGAGCAGGGCTTGTTGGTACGGTGGCCCGGTGGAATAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGACTGAGCAGGGCTTGTTGGTACGGTGGCCCGGTGGAATAGTAC  600

seq1  AGAGAAAGGATTCGGATCAGATTAAGGGGCTCAGGTTGATGTCCTTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGATTCGGATCAGATTAAGGGGCTCAGGTTGATGTCCTTGTCC  650

seq1  TGGGTTCAGGGGCAACAGGCAGGTAGGCAGTGGTTTCTCATAGCTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAGGGGCAACAGGCAGGTAGGCAGTGGTTTCTCATAGCTGTGTA  700

seq1  GTCAGAATTGGGGAGCGAGGGGGTGGGGAGGAGAGGCGTGACCGAAGGCA  750
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  GTCAGAATTGGGGAGCGAGGGGGTGGGGAGGAGAGGCTTGACCCAAGGCA  750

seq1  GTGTTAGGCCGGGCCTCCAGCCTTGGTTCTCCAGTCTTTCTACCCAGGGA  800
      | |||||| |||||||||||||||| |||| ||||||||||| |||||||
seq2  GGGTTAGG-CGGGCCTCCAGCCTTGTTTCTTCAGTCTTTCTATCCAGGGA  799

seq1  CACCCCCCTTTGTGACCTACTGTTTTATAAAGTGTTT  837
      | ||||| |||||||||| ||| |||||||| |||||
seq2  CTCCCCCTTTTGTGACCT-CTG-TTTATAAATTGTTT  834

seq1: chrY_1655127_1656300
seq2: B6Ng01-141D12.g_68_1219 (reverse)

seq1  GATATGAGCAGCTTAAGACAGGCTGACTTATGTAGGCA-ATAGCCTGGAA  49
      ||||||||| ||| ||||||||  ||||  ||| |||| |||| ||||||
seq2  GATATGAGC-GCTAAAGACAGGTCGACTAGTGT-GGCACATAG-CTGGAA  47

seq1  AGTTGCTTTATAAAGTTAGAAATGTCTGAGGATATTGCTTGGGAAACTTG  99
         |||||||  ||| ||||||||| ||||||| |||| ||||||   ||
seq2  --GTGCTTTAATAAG-TAGAAATGT-TGAGGAT-TTGC-TGGGAA--CTG  89

seq1  ATGATGACATGGTCTGAGGAATAACTGTAAGACAGAAAATTTTAAAAAGG  149
      ||||| ||||| |||| |||||| ||||||||||| ||   |||||||||
seq2  ATGATAACATGTTCTG-GGAATATCTGTAAGACAGTAA---TTAAAAAGG  135

seq1  TGTTGATGTCTGCTTAGAGAGGGATTTAATCTCAGGA-TATGGGAATCAA  198
      || |||||||||| ||||||||||||| ||||||||| |||| |||||||
seq2  TG-TGATGTCTGC-TAGAGAGGGATTT-ATCTCAGGATTATGAGAATCAA  182

seq1  AACCAGATAGTGATGAATTCTCTGCTGAACTGCACAGGAAGGCATAGAAA  248
      ||||||||||||||||  ||| |||||||||||||| ||| |||||||||
seq2  AACCAGATAGTGATGA--TCTTTGCTGAACTGCACA-GAAAGCATAGAAA  229

seq1  AACTAGGACTATCCAGAAAAATGCAGTCCCAGAAAAGAAAAACAGAAAAA  298
      ||||||||||||||||  ||||||||||||||||||| ||||||| ||||
seq2  AACTAGGACTATCCAG--AAATGCAGTCCCAGAAAAG-AAAACAG-AAAA  275

seq1  AAGGAGAGGAATTGGTAAGCAAAAAATAAGTGAATGTCTGATTGTAAATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGGAATTGGTAAGCAAAAAATAAGTGAATGTCTGATTGTAAATC  325

seq1  CTGTCTCTGAGAATAATAATCAAGACACCTTTAAAGGAACAATGAAACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGAGAATAATAATCAAGACACCTTTAAAGGAACAATGAAACCA  375

seq1  TGAGTAAAAGAACTAGACACACAATATGGCAAATGTTATATAAATCAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAAGAACTAGACACACAATATGGCAAATGTTATATAAATCAGTA  425

seq1  GAAAC-AATTAAAAATGTGTCATTAAAAATGAAAATATTCCCCTTATGTT  497
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATTAAAAATGTGTCATTAAAAATGAAAATATTCCCCTTATGTT  475

seq1  TTCTCTTGTGGTTTTCCTTTTTAAATGTCTTATTGAATCTGGAGGGATTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTGGTTTTCCTTTTTAAATGTCTTATTGAATCTGGAGGGATTG  525

seq1  ATCAGACTTTCTGGACACCGCCAGCACATACACAGCATACACTTGGACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTTTCTGGACACCGCCAGCACATACACAGCATACACTTGGACTT  575

seq1  GCCACTCTTCCATTGGCTCTTTACAACTCCGTCTACTTCAGTGACCACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCTTCCATTGGCTCTTTACAACTCCGTCTACTTCAGTGACCACAG  625

seq1  GGATGCCACACTCCCTCTTCCCATGGGACAATGTATTCATACCTATACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCACACTCCCTCTTCCCATGGGACAATGTATTCATACCTATACAG  675

seq1  AGAATTCAAAACAAACAAAATGTCTTCAAAGTGTCTCAGCAATTATGCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAAAACAAACAAAATGTCTTCAAAGTGTCTCAGCAATTATGCAT  725

seq1  TAGGTCCAATGTCTCAGTGCTCTCAGCTTCAGGCTCACGATTAATGGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCAATGTCTCAGTGCTCTCAGCTTCAGGCTCACGATTAATGGTTT  775

seq1  ATATTTGCTACCTTGTATAACTGCACTACAGTTTTCTACCTGGAAACTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTACCTTGTATAACTGCACTACAGTTTTCTACCTGGAAACTTG  825

seq1  CCTCAGATCCTGTCCTCAGCAAGGATCATGCAACACCATCAGAAAATTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATCCTGTCCTCAGCAAGGATCATGCAACACCATCAGAAAATTCT  875

seq1  ATGCTACAGAGGGAACAAAGTCTAGCTGTGTGCCATGCAGTTTGGTTAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACAGAGGGAACAAAGTCTAGCTGTGTGCCATGCAGTTTGGTTAGA  925

seq1  GCACTGTCAATATCCCTTCTCCTCCAGCAAACCCTCTCAAATGCTCACAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTCAATATCCCTTCTCCTCCAGCAAACCCTCTCAAATGCTCACAA  975

seq1  AGTTTGTCTTCCAAGACAAATCTGAGTGCCTAAAAGAAGGAGCAAAGCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTCTTCCAAGACAAATCTGAGTGCCTAAAAGAAGGAGCAAAGCAT  1025

seq1  CTCCACTTGCTCCAATATCTAAATGCCATTGCAGATTAAGAAAATCCCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTGCTCCAATATCTAAATGCCATTGCAGATTAAGAAAATCCCTA  1075

seq1  GCAGTTCCCCAAGATTCTCAGTCCAGGAGCATTTGGGCAATCTATTACTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCCCAAGATTCTCAGTCCAGGAGCATTTGGGCAATCTATTACTT  1125

seq1  TCATAGGGTCCAAACTTGTTTGAATTC  1174
      |||||||||||||||||||||||||||
seq2  TCATAGGGTCCAAACTTGTTTGAATTC  1152