BAC Information

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BAC

Clone NameB6Ng01-141I20
ChromosomeY (Build37)11 (Build37)
Map Location 1,982,773 - 1,983,14834,741,958 - 34,742,969
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I20.bB6Ng01-141I20.g
ACCDH939982DH939983
length8851,009
definitionDH939982|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I20, 5' end.DH939983|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,982,773 - 1,983,148)(34,741,958 - 34,742,969)
sequence
gaattcaatgaaaatgaagacacaacatacccaaatttattggacataat
aaaagcagtgctaagaagaaaattcataacactaagtgtcctcagaaaga
aattggagagatcctacactagcaaattaatagcatacctgaaaacccta
gaacaaaaagaagtaaacacatccaagaggagtagaaggcagaaaataat
caaactcagtgtggaaaccaaccaattagaaacaaagagaatgatacaaa
aaaaatcaagaaaaccaaaagctgttttttttttttttgttttttttttt
ttttttttttagaaaaatcaacaagatagatgaacccttagccaaactaa
ctaaaggacacagagacagtatccaaattaacaaaatcaagaatgaaaag
ggaaacataacaacagaaactgaggaaattaaaaaaaaaaaaatctgatc
atactacaaaagcctttactcaacaaaactggaaaatctagatgaaatgg
atgatgttttagacagataccatgtaccaaagttaaatcaagagcaggta
aactatctaaaccgtctcatatcccctaaggaaatagaagaaatcattta
aaaaaaaaaaaaaaaaaaacctcccaaccaaaaaaatccagggccaaatg
gctttagtgcagaattctagcagacctccaaagaagagctaactataact
attccatacaaaagaaacagaaggaacactacctaattaattctacaaat
ccattgttattctgatacctaaaccacataaagacccaaattttattagt
gaatattgatgaaaaatactcaataatattttggcaaaccggatccaagg
acacatcaaaaccatcattcaccacaatcaagtag
gaattctgcttttttagatattccaaggattccataaatcaagaaaaaaa
gtatctcaaaataaagtattcgacgtgtctctatgagaaccaggcgtaca
agccaggtgtacagtatgctgtacagtgatgaagtgagctgtaaaagtct
cccttggggacgtatcatttattatctgttatcatcagataaagggggaa
acgtgataagaataacagaacccagatgttaagaaaatatatgccaagta
aaaattttaagcatgtgtattgtagatttggggctctgaagattctattt
attgatgatgatcatgaattaaatttggatgaattttcagaagccatata
agagtgaagacttacttttctatgtgtgaagcatctgctggaatctgtgt
ctagacttagcagtccatgagcttgctcttttatctgcaactcagattca
tggagcactagaagctgtacaaaacaaagtacaagcaagagctaaatggg
tttcaaaagttttaaatattgtgcctctgtgtgggcatgtgcacatgaat
cctgatgaccactgagatcagaaaaagtgtattggatcttcttgatctgg
aggtacaggcagttgtgagctgcctgacctgggtgctcagaatgaactca
gatcctctacaagaatggtgtatctaacagcttctgggacaggcagaagc
cacagagcttctggagaagactgcatttaaggctccaaatatccaagcat
ccttacctgtaagaggagaggtgtccacctcgcccgggagggcttcacca
cagcatcttgggggagtcatcttggtttctgggatcctgccaagactatt
ctgtgcaggtgagagtgtggactacagaagctacatgaattctggtacag
ctctgtttcggactctattttctgtcaggaagcagtccaaatttcaaata
tctgttaccttcctgcagaggagagatggactgcagagagtgctctactc
actgaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1982773_1983148
seq2: B6Ng01-141I20.b_319_491 (reverse)

seq1  GATTTTTTTTTTTTTTAGAATTTTAGAATTTTATGCTTTTTTAGGGTTTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CGTATTCTTTTTAGTGTTTCAGGTTTTTATTTAGCGTTTTAGGGTTTTAT  100
                           | ||||| |||    |||||   |||  |
seq2  ---------------------GATTTTTTTTT----TTTTA--ATTTCCT  23

seq1  AGGCATTTTTTAGAGGGTTTTAGGGTTTTGCAGGGTGGTTTCATGGTTTT  150
         || ||| |     ||| |   ||||  |       ||||||  | ||
seq2  ---CAGTTTCT-----GTTGTTATGTTTCCC------TTTTCAT--TCTT  57

seq1  GATGTATTTTTAGGGCTTAGAAAGGAATTTAAGAATATTTTTAGGGTCTT  200
      ||     ||||                 ||||                  
seq2  GA-----TTTT----------------GTTAA------------------  68

seq1  AGGGTTTTTGGAGGTCTTTCTACTGT-TCTAAAGTGGGTTTTTGTTTTTG  249
            ||||||        |||||| |||   |||   ||| |      
seq2  ------TTTGGA--------TACTGTCTCT---GTGTCCTTTAG------  95

seq1  TTTTTGTTTTGAGAGTTTTAAGGTTT--TCTTTTTTCTT--TTTTTCTTA  295
        || |||| |       ||||| ||  ||| | || ||  ||||||| |
seq2  --TTAGTTTGG------CTAAGGGTTCATCTATCTTGTTGATTTTTCTAA  137

seq1  AACAGAGAAACCCGTCTCAAAAAAAAAAAACCCAGCAACAACAAAAACAT  345
      ||                ||||||||||||      || ||||||||   
seq2  AA----------------AAAAAAAAAAAA------AAAAACAAAAA---  162

seq1  ACAAAACAAAACAAAAAAACCAAAAATAACA  376
        |||| ||||||                  
seq2  --AAAAAAAAACA------------------  173

seq1: chr11_34741958_34742969
seq2: B6Ng01-141I20.g_70_1078 (reverse)

seq1  AGTTTCAGTGGTTAGAGCACTCTCTGCAGTCAATCTCTCCTCTTGCAGGG  50
      ||||||||||  ||||||||||||||||||| |||||||||| |||| ||
seq2  AGTTTCAGTGAGTAGAGCACTCTCTGCAGTCCATCTCTCCTC-TGCA-GG  48

seq1  AAGGTTGACAGATATCTGGAATTTGGACCTGCCTCCTGGCAGAAGATGAA  100
      |||| | |||||||| || |||||||| |||| ||||| ||||| ||  |
seq2  AAGG-TAACAGATATTTGAAATTTGGA-CTGCTTCCTGACAGAAAATAGA  96

seq1  GTCCCGAAACAGGGCTTGTCCCAGAATCCATGTAGCTTCTGTAGTCCACA  150
      || ||||||||| || ||| ||||||| ||||||||||||||||||||||
seq2  GT-CCGAAACAGAGC-TGTACCAGAATTCATGTAGCTTCTGTAGTCCACA  144

seq1  CTCTCACCTGCACAGACTAGTCTTGGCAGGATCCCAG-AACCAAGATGGC  199
      |||||||||||||||| |||||||||||||||||||| |||||||||| |
seq2  CTCTCACCTGCACAGAATAGTCTTGGCAGGATCCCAGAAACCAAGATGAC  194

seq1  TCCCCC-AGATGCTGTGGTGAAGCCCTCCCGGGCGGGGTGGACACCTCTC  248
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCCCCAAGATGCTGTGGTGAAGCCCTCCCGGGCGAGGTGGACACCTCTC  244

seq1  CTCTTACAGGTAAGG-TGCTTGGATATTTGGAGCCTTAAATGCAGTCTTC  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTTACAGGTAAGGATGCTTGGATATTTGGAGCCTTAAATGCAGTCTTC  294

seq1  TCCAGAAGCTCTGTGGCTTCTGCCTGTCCCAGAAGCTGTTAGATACACCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGCTCTGTGGCTTCTGCCTGTCCCAGAAGCTGTTAGATACACCA  344

seq1  TTCTTGTAGAGGATCTGAGTTCATTCTGAGCACCCAGGTCAGGCAGCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTAGAGGATCTGAGTTCATTCTGAGCACCCAGGTCAGGCAGCTCA  394

seq1  CAACTGCCTGTACCTCCAGATCAAGAAGATCCAATACACTTTTTCTGATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCTGTACCTCCAGATCAAGAAGATCCAATACACTTTTTCTGATC  444

seq1  TCAGTGGTCATCAGGATTCATGTGCACATGCCCACACAGAGGCACAATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTCATCAGGATTCATGTGCACATGCCCACACAGAGGCACAATAT  494

seq1  TTAAAACTTTTGAAACCCATTTAGCTCTTGCTTGTACTTTGTTTTGTACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTTTGAAACCCATTTAGCTCTTGCTTGTACTTTGTTTTGTACA  544

seq1  GCTTCTAGTGCTCCATGAATCTGAGTTGCAGATAAAAGAGCAAGCTCATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGTGCTCCATGAATCTGAGTTGCAGATAAAAGAGCAAGCTCATG  594

seq1  GACTGCTAAGTCTAGACACAGATTCCAGCAGATGCTTCACACATAGAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTAAGTCTAGACACAGATTCCAGCAGATGCTTCACACATAGAAAA  644

seq1  GTAAGTCTTCACTCTTATATGGCTTCTGAAAATTCATCCAAATTTAATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCTTCACTCTTATATGGCTTCTGAAAATTCATCCAAATTTAATTC  694

seq1  ATGATCATCATCAATAAATAGAATCTTCAGAGCCCCAAATCTACAATACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATCATCAATAAATAGAATCTTCAGAGCCCCAAATCTACAATACA  744

seq1  CATGCTTAAAATTTTTACTTGGCATATATTTTCTTAACATCTGGGTTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTAAAATTTTTACTTGGCATATATTTTCTTAACATCTGGGTTCTG  794

seq1  TTATTCTTATCACGTTTCCCCCTTTATCTGATGATAACAGATAATAAATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTATCACGTTTCCCCCTTTATCTGATGATAACAGATAATAAATG  844

seq1  ATACGTCCCCAAGGGAGACTTTTACAGCTCACTTCATCACTGTACAGCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTCCCCAAGGGAGACTTTTACAGCTCACTTCATCACTGTACAGCAT  894

seq1  ACTGTACACCTGGCTTGTACGCCTGGTTCTCATAGAGACACGTCGAATAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACACCTGGCTTGTACGCCTGGTTCTCATAGAGACACGTCGAATAC  944

seq1  TTTATTTTGAGATACTTTTTTTCTTGATTTATGGAATCCTTGGAATATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGAGATACTTTTTTTCTTGATTTATGGAATCCTTGGAATATCT  994

seq1  AAAAAAGCAGAATTC  1012
      |||||||||||||||
seq2  AAAAAAGCAGAATTC  1009