BAC Information

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BAC

Clone NameB6Ng01-142B09
ChromosomeY (Build37)18 (Build37)
Map Location 1,120,576 - 1,120,99241,235,254 - 41,236,378
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142B09.bB6Ng01-142B09.g
ACCDH940372DH940373
length4861,110
definitionDH940372|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B09, 5' end.DH940373|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,576 - 1,120,992)(41,235,254 - 41,236,378)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttcttctttttttttatttcttttttct
tttattacgtattttcctcaattacatttccaatgctatcccaaaaatcc
cccattccccccccccactcccttacccacccattcctattttttggccc
tggcattcccctgtactggggcatataaagtttgcctgtccaatgggcct
ctctttccagtgatggccgactaggccatcttttgatacatatgcaggta
gagtcaagagctccggggtactatttagttcataatgttgcaccttcagg
gttgcagatctctttagctccttgggtactttctctagctcctccattgg
gggccctgtgatccatccaatagttgactgtgagcattcacttctgtgtt
tgctaggccccggcctagtctcacaagagacagcta
gaattcaagagcagatttactttagtggagccattaaagaggaattttca
aattgaagtaaaaggacagcaagtagcaaaaggatggcttaggtaagtgc
aaactcactggtaaaggttagtatatgagcaaataaatgagctattattg
taatggtagtgggcaaattatactttattctaagataaaagtttaggaat
gaaagcaaaagtattaaaataaacacaaaacacattaaaacatacactgt
gatattaataaaacaaaccatgtgtggggagacaaggttaggtgtagaag
tttatgttgttgaatttaaattatcagctggaatatgtttgtaaaatatt
acaaaattacaaatatggaccatataataacagttttattatataaaacc
tctggcatttctaaagaaaatacatacagaatctatagaaagtttacaag
agaaaaccagaaataactgaaacacaataatacaaaatcaatgaagcata
aagagaacatgagaggaaaggtgaaggatggaactgtaagatagtcataa
aatgggaaaaaagaaatggagttggctgttgtagttatagcatcaaggcc
agcactggggaagctgaggctagaaaatcatagcctaagctaaaatagag
actttgaagccaaagtggccccataagttcccatctcaaacagagacaaa
taatggagagaggctaggagggggagaggaggcgaagggacagaaagggg
agacaggagagggactggagagaggggtgagagtgacagacagaaacaaa
gtaactaagagaaaggaacagagttagtataatataaatgtaaactgaca
caggaatcaacagacatagagttaaacttgacaggaatttagaggaggca
actatatattaaccagaggaagctccattagaactcacttttgagctaaa
gaagaggtagctaagatatatgatatatatgtgatttcaatcaaaagaga
acagtagctatgactgtctgcaagacagacattaagcaaaacggtcccaa
actcccccaaaaagcaggttataataaatcaggtctctaattccacaacg
gaacatatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120576_1120992
seq2: B6Ng01-142B09.b_125_532

seq1  -TTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTA  49
       ||||||||| || |||||||    |||||||| ||||||  |||| |||
seq2  TTTTTTTTTATTTCTTTTTTC----TTTTATTACGTATTTTCCTCAATTA  46

seq1  CATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCC  99
      ||||||||||||||| |||||| |||||||| ||  ||| ||||||||||
seq2  CATTTCCAATGCTATCCCAAAAATCCCCCAT-TC--CCCCCCCCCACTCC  93

seq1  CCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGG  149
      | | |||||||| |||   ||||||||||||| |||||||||||||||||
seq2  CTTACCCACCCATTCCTATTTTTTGGCCCTGGCATTCCCCTGTACTGGGG  143

seq1  CATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGAC  199
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  CATATAAAGTTTGCCTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGAC  193

seq1  TAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTAC  249
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TAGGCCATCTTTTGATACATATGCAGGTAGAGTCAAGAGCTCCGGGGTAC  243

seq1  TGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGC  299
      |  |||| ||||||   |||| |||||  ||||||| ||||| |||||||
seq2  TATTTAGTTCATAA---TGTTGCACCTTCAGGGTTGCAGATCTCTTTAGC  290

seq1  TCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCC  349
      ||||||| ||||||||||||||||||||||||| ||||| ||||||||||
seq2  TCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCC  340

seq1  ATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAG  399
      | ||| ||||||||||||| |||||||||||||||| ||||||||| |||
seq2  AATAGTTGACTGTGAGCATTCACTTCTGTGTTTGCTAGGCCCCGGCCTAG  390

seq1  TCTCACAAGAGACAGCTA  417
      ||||||||||||||||||
seq2  TCTCACAAGAGACAGCTA  408

seq1: chr18_41235254_41236378
seq2: B6Ng01-142B09.g_68_1177

seq1  GAATTCAAGAGCAGATTTACTTTAGTGGAGCCATTAAAGAGGAATTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCAGATTTACTTTAGTGGAGCCATTAAAGAGGAATTTTCA  50

seq1  AATTGAAGTAAAAGGACAGCAAGTAGCAAAAGGATGGCTTAGGTAAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGTAAAAGGACAGCAAGTAGCAAAAGGATGGCTTAGGTAAGTGC  100

seq1  AAACTCACTGGTAAAGGTTAGTATATGAGCAAATAAATGAGCTATTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACTGGTAAAGGTTAGTATATGAGCAAATAAATGAGCTATTATTG  150

seq1  TAATGGTAGTGGGCAAATTATACTTTATTCTAAGATAAAAGTTTAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTAGTGGGCAAATTATACTTTATTCTAAGATAAAAGTTTAGGAAT  200

seq1  GAAAGCAAAAGTATTAAAATAAACACAAAACACATTAAAACATACACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAAAGTATTAAAATAAACACAAAACACATTAAAACATACACTGT  250

seq1  GATATTAATAAAACAAACCATGTGTGGGGAGACAAGGTTAGGTGTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAATAAAACAAACCATGTGTGGGGAGACAAGGTTAGGTGTAGAAG  300

seq1  TTTATGTTGTTGAATTTAAATTATCAGCTGGAATATGTTTGTAAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTGTTGAATTTAAATTATCAGCTGGAATATGTTTGTAAAATATT  350

seq1  ACAAAATTACAAATATGGACCATATAATAACAGTTTTATTATATAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTACAAATATGGACCATATAATAACAGTTTTATTATATAAAACC  400

seq1  TCTGGCATTTCTAAAGAAAATACATACAGAATCTATAGAAAGTTTACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATTTCTAAAGAAAATACATACAGAATCTATAGAAAGTTTACAAG  450

seq1  AGAAAACCAGAAATAACTGAAACACAATAATACAAAATCAATGAAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCAGAAATAACTGAAACACAATAATACAAAATCAATGAAGCATA  500

seq1  AAGAGAACATGAGAGGAAAGGTGAAGGATGGAACTGTAAGATAGTCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACATGAGAGGAAAGGTGAAGGATGGAACTGTAAGATAGTCATAA  550

seq1  AATGGGAAAAAAGAAATGGAGTTGGCTGTTGTAGTTATAGCATCAAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAAAAAGAAATGGAGTTGGCTGTTGTAGTTATAGCATCAAGGCC  600

seq1  AGCACTGGGGAAGCTGAGGCTAGAAAATCATAGCCTAAGCTAAAATAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGGAAGCTGAGGCTAGAAAATCATAGCCTAAGCTAAAATAGAG  650

seq1  ACTTTGAAGCCAAAGTGGCCCCATAAGTTCCCATCTCAAACAGAGACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAGCCAAAGTGGCCCCATAAGTTCCCATCTCAAACAGAGACAAA  700

seq1  TAATGGAGAGAGGCTAGGAGGGGGAGAGGAGGCGAAGGGACAGAAAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGAGAGGCTAGGAGGGGGAGAGGAGGCGAAGGGACAGAAAGGGG  750

seq1  AGACAGGAGAGGGACTGGAGAGAGGGGTGAGAGTGACAGACAGAAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGAGGGACTGGAGAGAGGGGTGAGAGTGACAGACAGAAACAAA  800

seq1  GTAACTAAGAGAAA-GAACAGAGTTAGTATAATATAAATGTAAACTGACA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAACTAAGAGAAAGGAACAGAGTTAGTATAATATAAATGTAAACTGACA  850

seq1  CAGGAATCAACAGACATAGAGTAAAACTTGACAGGAATTTAGAGGAGGCA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGGAATCAACAGACATAGAGTTAAACTTGACAGGAATTTAGAGGAGGCA  900

seq1  ACTATATATTAACCAGAGGAAGCTCCCATTAGAACTCACTTTTGAGCTAA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTATATATTAACCAGAGGAAGCT-CCATTAGAACTCACTTTTGAGCTAA  949

seq1  AAGTAAAGAGATAGCAAAGATAATATGATAATATATGTGAATTTCAATCA  999
      |    ||||| |||| ||||| ||||||| ||||||||| ||||||||||
seq2  A---GAAGAGGTAGCTAAGAT-ATATGAT-ATATATGTG-ATTTCAATCA  993

seq1  AAAGAGAACAGTAGCAATGACATGTCTACAAGACAGACATTAAGCCAAAA  1049
      ||||||||||||||| ||||| ||||| |||||||||||||||||  |||
seq2  AAAGAGAACAGTAGCTATGAC-TGTCTGCAAGACAGACATTAAGC--AAA  1040

seq1  ACTGTCACAAAACTCCCCACAAAAGACAAGTTATTAAATAAATACAGTTC  1099
      || ||| | ||||||||| |||||  || |||||  ||||||| ||| ||
seq2  ACGGTC-CCAAACTCCCC-CAAAAAGCAGGTTAT--AATAAAT-CAGGTC  1085

seq1  TTCAATT-CACAACAATGAACATATAC  1125
      |  |||| ||||||   ||||||||||
seq2  TCTAATTCCACAAC--GGAACATATAC  1110