BAC Information

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BAC

Clone NameB6Ng01-142G06
Chromosome11 (Build37)Y (Build37)
Map Location 50,233,228 - 50,234,388573,922 - 573,956
singlet/doubletsingletsinglet
Overlap geneRufy1
Upstream geneLOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1
Downstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142G06.bB6Ng01-142G06.g
ACCDH940600DH940601
length1,156969
definitionDH940600|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G06, 5' end.DH940601|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,233,228 - 50,234,388)(573,922 - 573,956)
sequence
gaattcaaacagagaatcagaccacaacagcataagaacagcaacaaaca
cagaacaaaataattacctgtgggaggaatgtgtgtgtgtacacatacac
gtacacacacgagtcacactgtagtgtaggggttagagaggtactgtctg
ggcacagagaatgcacgctgtgcaacttaggtgccttttgcattttgtac
cacaggctcttcaagtgttaagggtcttataacatttctgaggctcaggc
tcatttatgcaacttatgtttgtggtgaaataccacatcactgggctaga
gacacgtctgcagtttccctgattcccacgttccacctgctgtgggtgct
ggaaaccaaactccagtcctcagtgagagcagcaagtgccctgtctgcag
tccaacaacaaatgtaaacgacctgaaccacgtggcaaggggcagccgct
gtcttcatattaaagaacaggagtgggaggctcagaaaggttcaagtctc
gctcaaggtcatgtgacgagtgagcagcacaggtggggtcagaatccatg
tcatggttcctgctacagagtgttaagttaggaaggacttcagaggtggc
aaacacccgagagaggcaagcaaacactcagcgttactacttcttactca
ctttagttctggaagattcctgacactggtagctatatctgatgcttcag
gacaaagtttttccaccagctccaaaggaccaaagaaagacttattttgg
ccaatgaaactcttcttgactaaaaggggaaacatgagtgtaagtcatga
gaatgggctgcaggccctcctgggccccactggcttcctttcaaaagcca
agcacagctccgtagctccacactccatcctacgacccaggcattttgga
tggcagaggccacagaacaaattggctctgccttccttcagcatgagctt
tctctgatcccatgctctttcttcagaggttactgcttatgaactgaaat
ctggtgaatcccacccccttcaccctggtgccagcatcactgctggacct
cctgattgtcacagcactcatcctgaactggctaaaataatctaatgctt
ttctatatcttccatttccttacccttaaacgtggtctcaattggctgaa
agggtt
gaattcactttggctggccttgaagtcacagaggcagatctgcctgcctc
tgcctctcaagtgctgggattatagacctatgccactgtgcccaatgatt
cttcttctgactaacccaaagttcagtgattggaggcattaatgaaattt
gcaaaatcttctggcatacaacagctaataatcacagaagtgatcgcctt
tccaggaaaggggatttgtctgtgtgtcttattaattcttcatggtcaac
ttgactgtatttcgaattatgacagaatcacaccttgagagtgtctatgg
agtttgcacaaatgtctaactgaagaaggaaaaccccttgagaaccccgc
tgttggtgagtgcagaggtctagaacagattatgaagggggaaggaagtg
agctgtgctccagcgttcatctctctttgcttcctggatgtagtagcaac
aggagcagccacttcacactcctgctccaggccatccctgtcacgatgga
cagctccctcgagccatcagctgaaacacccaccctcccttctgcaggca
tatattttcacaacctactttaataagagttcaagtttccctcctgccca
ccacccaccagtggtagtggaagtatatgggggaagtagacctgcttaga
aatagttctttgggggtgattccagtcttcattgtcaggatatcagttct
actagcaaaccaccaaacatgaattgccagctgcagaccagtccactcgg
cagacaccacgcacgaatcagcaaaggcagtttcaatccagaagtccatg
gaagtggcgagaagctgcaggaacctcacgagaagttctttggcaaattt
ctcctatgaagtcaccatgagcgagctcagcaatgcaatgttaaagctaa
ccatatgcgcatgtcatcagtgaagaacagcacgtagagcagagctaacc
aatgctcgacctcccactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50233228_50234388
seq2: B6Ng01-142G06.b_45_1200

seq1  GAATTCAAACAGAGAATCAGACCACAACAGCATAAGAACAGCAACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGAGAATCAGACCACAACAGCATAAGAACAGCAACAAACA  50

seq1  CAGAACAAAATAATTACCTGTGGGAGGAATGTGTGTGTGTACACATACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAAATAATTACCTGTGGGAGGAATGTGTGTGTGTACACATACAC  100

seq1  GTACACACACGAGTCACACTGTAGTGTAGGGGTTAGAGAGGTACTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACACGAGTCACACTGTAGTGTAGGGGTTAGAGAGGTACTGTCTG  150

seq1  GGCACAGAGAATGCACGCTGTGCAACTTAGGTGCCTTTTGCATTTTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAGAATGCACGCTGTGCAACTTAGGTGCCTTTTGCATTTTGTAC  200

seq1  CACAGGCTCTTCAAGTGTTAAGGGTCTTATAACATTTCTGAGGCTCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTCTTCAAGTGTTAAGGGTCTTATAACATTTCTGAGGCTCAGGC  250

seq1  TCATTTATGCAACTTATGTTTGTGGTGAAATACCACATCACTGGGCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATGCAACTTATGTTTGTGGTGAAATACCACATCACTGGGCTAGA  300

seq1  GACACGTCTGCAGTTTCCCTGATTCCCACGTTCCACCTGCTGTGGGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTCTGCAGTTTCCCTGATTCCCACGTTCCACCTGCTGTGGGTGCT  350

seq1  GGAAACCAAACTCCAGTCCTCAGTGAGAGCAGCAAGTGCCCTGTCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCAAACTCCAGTCCTCAGTGAGAGCAGCAAGTGCCCTGTCTGCAG  400

seq1  TCCAACAACAAATGTAAACGACCTGAACCACGTGGCAAGGGGCAGCCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAACAAATGTAAACGACCTGAACCACGTGGCAAGGGGCAGCCGCT  450

seq1  GTCTTCATATTAAAGAACAGGAGTGGGAGGCTCAGAAAGGTTCAAGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATATTAAAGAACAGGAGTGGGAGGCTCAGAAAGGTTCAAGTCTC  500

seq1  GCTCAAGGTCATGTGACGAGTGAGCAGCACAGGTGGGGTCAGAATCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGTCATGTGACGAGTGAGCAGCACAGGTGGGGTCAGAATCCATG  550

seq1  TCATGGTTCCTGCTACAGAGTGTTAAGTTAGGAAGGACTTCAGAGGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTCCTGCTACAGAGTGTTAAGTTAGGAAGGACTTCAGAGGTGGC  600

seq1  AAACACCCGAGAGAGGCAAGCAAACACTCAGCGTTACTACTTCTTACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCGAGAGAGGCAAGCAAACACTCAGCGTTACTACTTCTTACTCA  650

seq1  CTTTAGTTCTGGAAGATTCCTGACACTGGTAGCTATATCTGATGCTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTCTGGAAGATTCCTGACACTGGTAGCTATATCTGATGCTTCAG  700

seq1  GACAAAGTTTTTCCACCAGCTCCAAAGGACCAAAGAAAGACTTATTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTTTTTCCACCAGCTCCAAAGGACCAAAGAAAGACTTATTTTGG  750

seq1  CCAATGAAACTCTTCTTGACTAAAAGGGGAAACATGAGTGTAAGTCATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAAACTCTTCTTGACTAAAAGGGGAAACATGAGTGTAAGTCATGA  800

seq1  GAATGGGCTGCAGGCCCTCCTGGGCCCCACTGGCTTCCTTTCAAAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGCTGCAGGCCCTCCTGGGCCCCACTGGCTTCCTTTCAAAAGCCA  850

seq1  AGCACAGCTCCGTAGCTCCACACTCCATCCTACGACCCAGGCA-TTTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCACAGCTCCGTAGCTCCACACTCCATCCTACGACCCAGGCATTTTGGA  900

seq1  TGGCAGAGGCCACAGAACAAATTGGCTCTGCCTTCCTTCAGCAATGAGCT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGCAGAGGCCACAGAACAAATTGGCTCTGCCTTCCTTCAGC-ATGAGCT  949

seq1  TTCTCTGATCCCATGCTCTTTCTTCAAGAGGTTACTGCTTATGAACTGAA  999
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTCTGATCCCATGCTCTTTCTTC-AGAGGTTACTGCTTATGAACTGAA  998

seq1  ATCTGTGAAATCCCACCCCCTTCACCCTGGTGCCAGCATCACTGCTGGA-  1048
      |||||   ||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTGGTGAATCCCACCCCCTTCACCCTGGTGCCAGCATCACTGCTGGAC  1048

seq1  CTCCTGATTGTCACAGCCACTTCCATCCTGAACT-GCTACAATATTCTAA  1097
      |||||||||||||||| ||||  ||||||||||| |||| |||| |||||
seq2  CTCCTGATTGTCACAG-CACT--CATCCTGAACTGGCTAAAATAATCTAA  1095

seq1  TTGCTTTTCTAATATCTT-CATTTCCTTACCCTTATAACGTGTTCTCCAT  1146
       ||||||||| ||||||| |||||||||||||||| |||||| ||| || 
seq2  -TGCTTTTCT-ATATCTTCCATTTCCTTACCCTTA-AACGTGGTCT-CAA  1141

seq1  TTGGCTAGAAGGGTT  1161
      ||||||  |||||||
seq2  TTGGCTGAAAGGGTT  1156

seq1: chrY_573922_573956
seq2: B6Ng01-142G06.g_105_139

seq1  ATCTGCCTGCCTCTGCCTCCCAAGCGCTGGGATTA  35
      ||||||||||||||||||| |||| ||||||||||
seq2  ATCTGCCTGCCTCTGCCTCTCAAGTGCTGGGATTA  35