BAC Information

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BAC

Clone NameB6Ng01-142O03
Chromosome13 (Build37)Y (Build37)
Map Location 66,095,928 - 66,096,4381,544,618 - 1,545,242
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855
Downstream geneEG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142O03.bB6Ng01-142O03.g
ACCDH940966DH940967
length505994
definitionDH940966|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O03, 5' end.DH940967|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,095,928 - 66,096,438)(1,544,618 - 1,545,242)
sequence
atacaggagagaagccttaaaagtttagtgaatgtgacaaacgctttacc
cacaaacacagtcttagtattcatcaggtaattcatacaggagagaaacc
ttataaatgtaatgaatgtgatgaattctttagacttaaatgtagttttt
acactcatcaaagaatgcacaaactagagaatatctaaaaatgaagcaaa
taagacaaacccttcaccaagaaagatcatcttagaactcatcaaagaat
acatacaggagggtgatctttcaaatgtaaatgttcaaagtctttactgt
taggtcatctctgacatcagagactacacacaggagagaaacctcatgag
aacagacctttacctgaaagttagttctaagaaaatatctagaaatttat
agtgaggaaggggtggggtgggggatgggcaattaatactggaaaacatg
tggcatgttttttacctaagtggaattctttgcaacacttgaggctccac
actgg
gaattccagagaaaggtaaagacatagttttaaaaagcaagcatgtactc
cactgcattggagattctaagagatggataatttattcaataggttccac
ttatcaaattaaatcaaactaagataagcaacttaaacagacctaaaaac
ctagaaaaagagaagtcattacaaatctgccaccaaaaagacctcaaggc
catgagttttggggtagaatcctagcagactttcaaggaggagataacaa
ggatactcctcaaagtattcaacaatattgaaagagaagaaacattggcc
gatttattttgtgaacccatgtgtagtggctattcctggttgtcaacttg
acaatatttggaatgaactacaatccagaattggaaggctcaccagtgac
ccttatctggaggcttggagatccttatctggatcttagtttgaagatct
tgagccatagtggctatggattccagaagattcaatctccgagtttaagg
aacacacctttaatctgggctacgcctttcatctgggattaaaggtgtgg
tgggacacacctttaatctgggctacaccttctgctggagacaatataag
gacattggaagaagggagtctagctcttgctcttgctccttcgcctgctt
gccatgtgagactgagtaactgctagatccttggacttccattcacagct
gcgactgaacgattgtaaggaattgggctgccgactgtaagtcatcaata
aattcctttactatctagagactgtccataagttctgtgactctagagaa
ccctgactaatacaccatggttactcaaatatccagtcaataaagactca
gcaacaaagagaattgcagaccaactttccttaaagtgactgacacaaaa
acactttataagcaaacaataaaaaagaaagaaaatagataaaatatcaa
gctcatcccccatgatcaatgaggtaggcttcattaatagatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66095928_66096438
seq2: B6Ng01-142O03.b_47_557

seq1  GAATTCATACAGGAGAGAAGCCTTAAAAGTTTAGTGAATGTGACAAACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGAGAAGCCTTAAAAGTTTAGTGAATGTGACAAACGC  50

seq1  TTTACCCACAAACACAGTCTTAGTATTCATCAGGTAATTCATACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCACAAACACAGTCTTAGTATTCATCAGGTAATTCATACAGGAGA  100

seq1  GAAACCTTATAAATGTAATGAATGTGATGAATTCTTTAGACTTAAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTATAAATGTAATGAATGTGATGAATTCTTTAGACTTAAATGTA  150

seq1  GTTTTTACACTCATCAAAGAATGCACAAACTAGAGAATATCTAAAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACACTCATCAAAGAATGCACAAACTAGAGAATATCTAAAAATGA  200

seq1  AGCAAATAAGACAAACCCTTCACCAAGAAAGATCATCTTAGAACTCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATAAGACAAACCCTTCACCAAGAAAGATCATCTTAGAACTCATCA  250

seq1  AAGAATACATACAGGAGGGTGATCTTTCAAATGTAAATGTTCAAAGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACATACAGGAGGGTGATCTTTCAAATGTAAATGTTCAAAGTCTT  300

seq1  TACTGTTAGGTCATCTCTGACATCAGAGACTACACACAGGAGAGAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTAGGTCATCTCTGACATCAGAGACTACACACAGGAGAGAAACCT  350

seq1  CATGAGAACAGACCTTTACCTGAAAGTTAGTTCTAAGAAAATATCTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAACAGACCTTTACCTGAAAGTTAGTTCTAAGAAAATATCTAGAA  400

seq1  ATTTATAGTGAGGAAGGGGTGGGGTGGGGGATGGGCAATTAATACTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGTGAGGAAGGGGTGGGGTGGGGGATGGGCAATTAATACTGGAA  450

seq1  AACATGTGGCATGTATTTTACCAAAGTGGAATTCTTTGCAACACTTGAGG  500
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AACATGTGGCATGTTTTTTACCTAAGTGGAATTCTTTGCAACACTTGAGG  500

seq1  CTCCACACTGG  511
      |||||||||||
seq2  CTCCACACTGG  511

seq1: chrY_1544618_1545242
seq2: B6Ng01-142O03.g_285_569 (reverse)

seq1  CCTTAAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTATGGCTCA  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTTAAACTCGGAGATTGAATCTTCTGGAATCCATAGCCACTATGGCTCA  50

seq1  AGATCTCCATACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGG  100
      |||||| || || |||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCAAACTAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGG  100

seq1  GTCACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCATTCCAAATATTGT  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCACTGGTGAGCCTTCCAATTCTGGATTGTAGTTCATTCCAAATATTGT  150

seq1  CAAGTTGACAACCAGGAATAGCCACTACAGTGTGTGTGTGTGTGTGAGAG  200
      |||||||||||||||||||||||||||||                     
seq2  CAAGTTGACAACCAGGAATAGCCACTACA---------------------  179

seq1  AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250
                                                        
seq2  --------------------------------------------------  179

seq1  AGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAAAGAGAAAG  300
                                                        
seq2  --------------------------------------------------  179

seq1  AGAGAGAGAGAGAGAAGGGAGAGGCAGAGAATGAATGAAAATACATGGGG  350
                              ||  |  | |   |||||| || || 
seq2  ------------------------CATGGGTTCA--CAAAATAAATCGG-  202

seq1  ACTTTCTCTCATGTACCAATTC-CTTAGTATATGGGAGTTTACAGCAGAC  399
             |  ||||  |  ||| |||   |||| |    ||   | | ||
seq2  -------CCAATGTTTC--TTCTCTTTCAATATTG----TT---GAATAC  236

seq1  ATGGACTTCCTTCTCCTAGGGAGTTTTCTTTTTTTTTTTTATTTGAA--T  447
       | ||              ||||| | ||| || | |  |  |||||  |
seq2  TTTGA--------------GGAGTATCCTTGTTATCTCCTCCTTGAAAGT  272

seq1  ATGCAATTTGA-TCTCACCACTTCCATTTTATGCTACAAAAAAGTTCCAG  496
       |||  |  || |||                                   
seq2  CTGC--TAGGATTCT-----------------------------------  285

seq1  GAATCATCCTGAAAGGTGATTGCATCCCCATGCCTCTTGCAAATGTCCCT  546
                                                        
seq2  --------------------------------------------------  285

seq1  TGACTATATCCACCATGCAGCGAGGCATTTAGGAAGGACAGAAGACAGGA  596
                                                        
seq2  --------------------------------------------------  285

seq1  GCTTGAAAGTCTAAGATGCAGAGGATTCT  625
                                   
seq2  -----------------------------  285