BAC Information

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BAC

Clone NameB6Ng01-144J19
Chromosome14 (Build37)Y (Build37)
Map Location 14,425,185 - 14,426,3542,430,667 - 2,430,725
singlet/doubletsingletsinglet
Overlap geneSynpr
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354
Downstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144J19.bB6Ng01-144J19.g
ACCDH942246DH942247
length1,145452
definitionDH942246|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J19, 5' end.DH942247|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,425,185 - 14,426,354)(2,430,667 - 2,430,725)
sequence
gaattcaaggccagccttagtgatatgcccctcccaaacaatttcacttc
aagttagcatgagcctctgggaaggtgagttttcactgtcaacatgaagc
aatctaaaaccatcagggaagagtctaaatagatagtttgagatcaggtc
agtctttgggaatgtctgtgggaaattatcttaattccattaactgagat
gtggatataaactcgaaatatgggtgacaccatgtcatggctagaacttt
agctgaatggaaaggagagtcagcagagcaaagccatgcacaggttcatt
ctctctctgttcccaactaaagatgccacgtgctgctttatttctggctg
ccttgagtcccccacaatgatggaccataacctagaatggttaaataaag
taaaaccctcacacatgaactgccagcttgataatgccatggcaatttag
tcacatacttaaaaatgaaactaatggagtttccatgtttattctcttac
acacacacacaaacacgctcatgcgagggggccagacagacacatacaca
cagagagaaacaaatggagacataacacatgaagagagagaacacttaat
ccacatctgttcattctttcatgttcaaccgccttctagtgttaggtacc
tgctcaaaatttgcctaccagagacacagaatttttaaaggatgatcttg
tagaaaacaagaagcaagaacagaaaggagaacagatggtgaaagtaaga
gcctctgtaatttattcagaagccttatcacatgattttcatagggcgat
cctttcctttctacctttctaagacaaggtcttaattttccactgtttca
ctacatgtgcctgaacagtgttagtgtaagaccacagcccaagtctatct
cctgcttcgcatctaacagtaaagttgtcttgaagccagaaatcatcttg
ctgagtaatggcttctaatttgtaattcaatgcaatgttttccccacttt
cagtcacatgataagagggagatactgctgaagtagatagattaagctct
gtctgataagccacagaatatctctgtattttaaagtctcaattgaccat
ctgttgcagctgacagatggttgaattgacagagtatgggcttca
tgcactaaacccatggtcctgggcttttttttgtttgggagactattgat
gactgctttttttttttttttttttttttttttttttagaaaaatgggac
tgtttagatcattattctgatcctgatttaactttggtacctggtatctg
tctaggaagttttccatttcatccaggtttttcagttttgttgagtatat
ccttttgtagtaggatctgatgatgtttggaatttcctcaggaacttttg
ttatgtcttctttttcatttctgattttgttaattaggatgctccccctg
tgccctctagtgagtctggctatgggtttatctatcttgttgattttctc
aaagaacccgctcctggtttggttgattctttgaatagttcgttctcgtt
ctctctctctctctctctctctctctctctctctctctctctctgtgtgt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_14425185_14426354
seq2: B6Ng01-144J19.b_43_1187

seq1  GAATTCAAGGCCAGCCTTAGTGATATGCCCCTCCCAAACAATTTCACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTTAGTGATATGCCCCTCCCAAACAATTTCACTTC  50

seq1  AAGTTAGCATGAGCCTCTGGGAAGGTGAGTTTTCACTGTCAACATGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGCATGAGCCTCTGGGAAGGTGAGTTTTCACTGTCAACATGAAGC  100

seq1  AATCTAAAACCATCAGGGAAGAGTCTAAATAGATAGTTTGAGATCAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAACCATCAGGGAAGAGTCTAAATAGATAGTTTGAGATCAGGTC  150

seq1  AGTCTTTGGGAATGTCTGTGGGAAATTATCTTAATTCCATTAACTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGGGAATGTCTGTGGGAAATTATCTTAATTCCATTAACTGAGAT  200

seq1  GTGGATATAAACTCGAAATATGGGTGACACCATGTCATGGCTAGAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATAAACTCGAAATATGGGTGACACCATGTCATGGCTAGAACTTT  250

seq1  AGCTGAATGGAAAGGAGAGTCAGCAGAGCAAAGCCATGCACAGGTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATGGAAAGGAGAGTCAGCAGAGCAAAGCCATGCACAGGTTCATT  300

seq1  CTCTCTCTGTTCCCAACTAAAGATGCCACGTGCTGCTTTATTTCTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTTCCCAACTAAAGATGCCACGTGCTGCTTTATTTCTGGCTG  350

seq1  CCTTGAGTCCCCCACAATGATGGACCATAACCTAGAATGGTTAAATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGTCCCCCACAATGATGGACCATAACCTAGAATGGTTAAATAAAG  400

seq1  TAAAACCCTCACACATGAACTGCCAGCTTGATAATGCCATGGCAATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCTCACACATGAACTGCCAGCTTGATAATGCCATGGCAATTTAG  450

seq1  TCACATACTTAAAAATGAAACTAATGGAGTTTCCATGTTTATTCTCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACTTAAAAATGAAACTAATGGAGTTTCCATGTTTATTCTCTTAC  500

seq1  ACACACACACAAACACGCTCATGCGAGGGGGCCAGACAGACACATACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAACACGCTCATGCGAGGGGGCCAGACAGACACATACACA  550

seq1  CAGAGAGAAACAAATGGAGACATAACACATGAAGAGAGAGAACACTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAACAAATGGAGACATAACACATGAAGAGAGAGAACACTTAAT  600

seq1  CCACATCTGTTCATTCTTTCATGTTCAACCGCCTTCTAGTGTTAGGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTGTTCATTCTTTCATGTTCAACCGCCTTCTAGTGTTAGGTACC  650

seq1  TGCTCAAAATTTGCCTACCAGAGACACAGAATTTTTAAAGGATGATCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAATTTGCCTACCAGAGACACAGAATTTTTAAAGGATGATCTTG  700

seq1  TAGAAAACAAGAAGCAAGAACAGAAAGGAGAACAGATGGTGAAAGTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACAAGAAGCAAGAACAGAAAGGAGAACAGATGGTGAAAGTAAGA  750

seq1  GCCTCTGTAATTTATTCAGAAGCCTTATCACATGATTTTCATAGGGCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTAATTTATTCAGAAGCCTTATCACATGATTTTCATAGGGCGAT  800

seq1  CCTTTCCTTTCTACCTTTCTAAGACAAGGTCTTAATTTTCCACTGTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTTCTACCTTTCTAAGACAAGGTCTTAATTTTCCACTGTTTCA  850

seq1  CTACATGTGCCTGAACAGTGTTAGTGTAAGACCACAGCCCAAGTCTATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTGCCTGAACAGTGTTAGTGTAAGACCACAGCCCAAGTCTATCT  900

seq1  CCTGCTTCGCATCTAACAGTAAAGTTGTCTTGAAGCCAGAAATCATCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCGCATCTAACAGTAAAGTTGTCTTGAAGCCAGAAATCATCTTG  950

seq1  CTGAGTAATGGCTTCTAATTTGTAATTCCAATGCAATGTTTTCCCCACTT  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGAGTAATGGCTTCTAATTTGTAATT-CAATGCAATGTTTTCCCCACTT  999

seq1  TCAGTTCACATGATAAGGAGGGAAGGATACTGCTGAAGTTAGATAGAATT  1050
      |||| ||||||||||| ||||||  ||||||||||||| ||||||||  |
seq2  TCAG-TCACATGATAA-GAGGGA--GATACTGCTGAAG-TAGATAGA--T  1042

seq1  TAAGCTCTGTCTGATAAAGCACAGAATAATTTCCTCCTTGGTATTTTTAA  1100
      |||||||||||||||||  |||||||||        ||  ||| ||||||
seq2  TAAGCTCTGTCTGATAAGCCACAGAATA-------TCTCTGTA-TTTTAA  1084

seq1  AGTTCTTCATTTGAACCATCTGTTGCAGGCTGACAGATGGGTTGATATTT  1150
      |||   ||| ||| ||||||||||||| |||||||||| |||||  | ||
seq2  AGT--CTCAATTG-ACCATCTGTTGCA-GCTGACAGAT-GGTTG--AATT  1127

seq1  GACAGAGTAATGGGTCTTCA  1170
      |||||||| ||||| |||||
seq2  GACAGAGT-ATGGG-CTTCA  1145

seq1: chrY_2430667_2430725
seq2: B6Ng01-144J19.g_472_524

seq1  TCTCTCTCTTTCTCCCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTGTCCT  50
      ||||||||| |||| |||||||||||||| ||||||||||||||||    
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG----  46

seq1  TCTGTGTGT  59
        |||||||
seq2  --TGTGTGT  53