BAC Information

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BAC

Clone NameB6Ng01-144P06
ChromosomeY (Build37)
Map Location 645,428 - 771,312
singlet/doubletdoublet
Overlap geneUsp9y
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144P06.bB6Ng01-144P06.g
ACCDH942494DH942495
length9741,063
definitionDH942494|Mus musculus domesticus DNA, BAC clone: B6Ng01-144P06, 5' end.DH942495|Mus musculus domesticus DNA, BAC clone: B6Ng01-144P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(645,428 - 646,006)(770,234 - 771,312)
sequence
gaattctaggtgagagaagatggaactggaaggagggtagggaaggggag
ggaaaaggcactgtataaaaaccaaaccaaaataaaaaattccttctaaa
caataaactggctgagaaacacctgaaaaaatgttcaacatccttaatca
tcagagaaatgcaaatcaaaacaaccccgagattccatctcacaccagtc
agaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatg
tggagaaagaggaacactcctccattgttggtgggattgcaagcttgtac
aaccactctggaaatcagtctggcggttcctcagaaaattggacatagta
ctaccggaggatccagcaatgcctctcctgggcatatacttagaagatgt
cccaacaggtatgaaggacacatgctccactatgttcatagcagccttat
ttataatagccagaagctggaaagaacccagatgtcccccaacagaggaa
tggatacagaaaatgtggtacatttacacaatggaatactactcagctat
taaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagg
gcattatcctgagtgaggtaacacaatcataaaataactcaaatgatatg
tactcactgataagttgatattagcccagaaacttagtatacccgagata
taagatacaatttgcaaaacacatgttcttcttctttctgaagaagaaca
aagaccaaagtgtggacactttgccccttcttagactttgaaacaatcac
ccttggaaggagttacagagacaaagtatggagttgagacaaaatgatgg
accatctagagactgccatatccagggatccatcccgtaattagcctcca
aacgatgacaccattgcatacactagcaagcgtttgctgaaaggaccttg
atatagctgtctcttgtgagacta
gaattccaggacaagaggaaactgttaaaaatttagaaacttttaggtta
aaaatgatactcaggtaagaaagatattttctgccttgagttactgttac
tgcaatttttttgtctgttttggtacttcatattgaacctagggctttgt
atggtaggcaagcattttaccagtactttatctcttatcctttaaatata
ttttttgtttggatttggttttaatttagatgtttcatttgtttgttttg
ggggcctgagacaagagtttatgctagttaagaattcactgtatacagtc
cagcccttttaatgtgtgatacttctagttcagtctttggagttgcttgt
ttggttggttaggaatatatcactaaggccctgttattgatgtaaatgat
taaaaatcattattggctgcattttttatagattgctacagatttcttct
tttaatggaaagatgaatgcactgaatgaaattaacaaagtgctttcaag
tgtgtcatattatacgcatggacatggtaattctgaagaagagtggctaa
ccgttgagcgaatgacagtaagttctttttaaaaaaaataacaaaacata
ttatttgtctatctgtttattgtgtaaggggctggaaggtctgaggagag
cttataagactaagatctcttcttgagctttgagacataataataaaact
tggcaacaactctaattatcagttacttccagagcaaaagaacaaacagc
aagcttaatgtgtttccaatagactcttatcagagtccatcacagagata
tgtaactatagttttgagaaagcaaacaccatgcgcacaaacacacaagt
gatgcacagacatacacttgtatacatatacttgtatatgtctatgcatc
aatatacatacctatatacatacaattaaagtaaatctaaaataaaacta
ctaaacattttaaatgataagaagcaagtaatgggaaaagtgtaagtaac
ttattgtgtcttttgtaaactgactctaatattagataacttgtttaagg
gatctttagtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_645428_646006
seq2: B6Ng01-144P06.b_48_626

seq1  GAATTCTAGGTGAGAGAAGATGGAACTGGAAGGAGGGTAGGGAAGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTGAGAGAAGATGGAACTGGAAGGAGGGTAGGGAAGGGGAG  50

seq1  GGAAAAGGCACTGTATAAAAACCAAACCAAAATAAAAAATTCCTTCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGCACTGTATAAAAACCAAACCAAAATAAAAAATTCCTTCTAAA  100

seq1  CAATAAACTGGCTGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACTGGCTGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCA  150

seq1  TCAGAGAAATGCAAATCAAAACAACCCCGAGATTCCATCTCACACCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAATGCAAATCAAAACAACCCCGAGATTCCATCTCACACCAGTC  200

seq1  AGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATG  250

seq1  TGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAC  300

seq1  AACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTA  350

seq1  CTACCGGAGGATCCAGCAATGCCTCTCCTGGGCATATACTTAGAAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGGAGGATCCAGCAATGCCTCTCCTGGGCATATACTTAGAAGATGT  400

seq1  CCCAACAGGTATGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGGTATGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTAT  450

seq1  TTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCCCAACAGAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCCCAACAGAGGAA  500

seq1  TGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTAT  550

seq1  TAAAAAGAATGAATTTATGAAATTCCTAG  579
      |||||||||||||||||||||||||||||
seq2  TAAAAAGAATGAATTTATGAAATTCCTAG  579

seq1: chrY_770234_771312
seq2: B6Ng01-144P06.g_67_1129 (reverse)

seq1  ACCACTTAAAAGATCACCTTTTAAAACAAGTTATCTATATTTAGAGTCAC  50
      ||||||  ||||||| ||||   ||||||||||||||   ||||||||| 
seq2  ACCACT--AAAGATC-CCTT---AAACAAGTTATCTAATATTAGAGTCA-  43

seq1  GTTTACAAAAGACACAAATAAGTTACTTAACACCTTTTCCCATTTACTTG  100
      ||||||||||||||| |||||||||||| ||| ||||||||| |||||||
seq2  GTTTACAAAAGACAC-AATAAGTTACTT-ACA-CTTTTCCCA-TTACTTG  89

seq1  CTTCTTATCATTTAAAATTGTTTAGTAGTTTTAATTTTAAGATTTTACTT  150
      ||||||||||||||||| |||||||||||||||  ||| ||| ||||| |
seq2  CTTCTTATCATTTAAAA-TGTTTAGTAGTTTTA--TTTTAGA-TTTAC-T  134

seq1  TTAATTGTATGTATATAGGTATGTATATTGATGCATAGACATATACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTATGTATATAGGTATGTATATTGATGCATAGACATATACAAGT  184

seq1  ATATGTATACAAGTGTATGTCTGTGCATCACTTGTGTGTTTGTGCGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATACAAGTGTATGTCTGTGCATCACTTGTGTGTTTGTGCGCATG  234

seq1  GTGTTTGCTTTCTCAAAACTATAGTTACATATCTCTGTGATGGACTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTTTCTCAAAACTATAGTTACATATCTCTGTGATGGACTCTGA  284

seq1  TAAGAGTCTATTGGAAACACATTAAGCTTGCTGTTTGTTCTTTTGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCTATTGGAAACACATTAAGCTTGCTGTTTGTTCTTTTGCTCTG  334

seq1  GAAGTAACTGATAATTAGAGTTGTTGCCAAGTTTTATTATTATGTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACTGATAATTAGAGTTGTTGCCAAGTTTTATTATTATGTCTCAA  384

seq1  AGCTCAAGAAGAGATCTTAGTCTTATAAGCTCTCCTCAGACCTTCCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGAAGAGATCTTAGTCTTATAAGCTCTCCTCAGACCTTCCAGCC  434

seq1  CCTTACACAATAAACAGATAGACAAATAATATGTTTTGTTATTTTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACACAATAAACAGATAGACAAATAATATGTTTTGTTATTTTTTTTA  484

seq1  AAAAGAACTTACTGTCATTCGCTCAACGGTTAGCCACTCTTCTTCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTTACTGTCATTCGCTCAACGGTTAGCCACTCTTCTTCAGAAT  534

seq1  TACCATGTCCATGCGTATAATATGACACACTTGAAAGCACTTTGTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTCCATGCGTATAATATGACACACTTGAAAGCACTTTGTTAATT  584

seq1  TCATTCAGTGCATTCATCTTTCCATTAAAAGAAGAAATCTGTAGCAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGTGCATTCATCTTTCCATTAAAAGAAGAAATCTGTAGCAATCT  634

seq1  ATAAAAAATGCAGCCAATAATGATTTTTAATCATTTACATCAATAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATGCAGCCAATAATGATTTTTAATCATTTACATCAATAACAGG  684

seq1  GCCTTAGTGATATATTCCTAACCAACCAAACAAGCAACTCCAAAGACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGTGATATATTCCTAACCAACCAAACAAGCAACTCCAAAGACTGA  734

seq1  ACTAGAAGTATCACACATTAAAAGGGCTGGACTGTATACAGTGAATTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGTATCACACATTAAAAGGGCTGGACTGTATACAGTGAATTCTT  784

seq1  AACTAGCATAAACTCTTGTCTCAGGCCCCCAAAACAAACAAATGAAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCATAAACTCTTGTCTCAGGCCCCCAAAACAAACAAATGAAACAT  834

seq1  CTAAATTAAAACCAAATCCAAACAAAAAATATATTTAAAGGATAAGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTAAAACCAAATCCAAACAAAAAATATATTTAAAGGATAAGAGAT  884

seq1  AAAGTACTGGTAAAATGCTTGCCTACCATACAAAGCCCTAGGTTCAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTGGTAAAATGCTTGCCTACCATACAAAGCCCTAGGTTCAATAT  934

seq1  GAAGTACCAAAACAGACAAAAAAATTGCAGTAACAGTAACTCAAGGCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACCAAAACAGACAAAAAAATTGCAGTAACAGTAACTCAAGGCAGA  984

seq1  AAATATCTTTCTTACCTGAGTATCATTTTTAACCTAAAAGTTTCTAAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTCTTACCTGAGTATCATTTTTAACCTAAAAGTTTCTAAATT  1034

seq1  TTTAACAGTTTCCTCTTGTCCTGGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  TTTAACAGTTTCCTCTTGTCCTGGAATTC  1063