BAC Information

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BAC

Clone NameB6Ng01-146H08
ChromosomeY (Build37)16 (Build37)
Map Location 1,120,586 - 1,121,07244,796,447 - 44,797,517
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146H08.bB6Ng01-146H08.g
ACCDH943597DH943598
length8881,055
definitionDH943597|Mus musculus domesticus DNA, BAC clone: B6Ng01-146H08, 5' end.DH943598|Mus musculus domesticus DNA, BAC clone: B6Ng01-146H08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,121,072)(44,796,447 - 44,797,517)
sequence
gaattctttttttttctttccattttttattaggtatttagctcatttac
atttccaatgctataccaaaagtcccccatacccacccacccccactccc
ctacccgcccactccccctttttggccctggcgttcccctgttctggggc
atataaagtttgtgtgtccaatgggcctctctttccagtgatggccgact
aggccatcttttgatacatatgcagctagagtcaagagctccggggtact
ggttagttcataatgttgatccacctatagggttgcagatccctttagct
ccttgggtactttctctagctcctccattgggagccctgtgatccatcca
ttagctgactgtgggcatccacttctgtgtttgctaggccccggcatagt
ctcacaagagacagctacatctgggtcctttcgataaaatcttgctagtg
tatgcaatggtgtcagcgtttggatgctgattatggggtggatccctaga
taaggtagtctctacatggtccatcctttcatctcagctccaaactttgt
ctctgtaactccttccaagggtgttttgttcccacttctaaggaggggca
tagtgtccatacttcagtcttcatttttcttgagtttcatgtgtttagga
aattgtatcttatatcttgggtatcctaggttttgggctaatatccactt
atcagtgagtacatattgtgtgagttcctttgtgaatgtgttacctcact
caggatgatgccctccaggtccatccatttggctaggaatttcataattc
attctttttaatagctgagtagctccattgtgtagatgtaccacattttc
tgtatccattcctctgtgaggggcatctgggttctttc
gaattctttgttcagttctgagccccatttattaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
cccctgtgcccatatcttcgcatttttattattaatagatcagtcaagct
gtcagtttacattttctccaattgtgtttgaatgtgcctttcttcatatt
cttattattattcttattcttattcttatatttttatattcttactttca
catttatactttccatgtttaattaaccagatgggtgatatgtcttacat
ttatgatattgactcaattatttaatggaactggactcatatctttgtca
acatgagagagacaggaagcatttgtaatgacagtattttcaactctttg
tattgctacaaaagtgctgccatatcatgcacaacagttttatggacatt
atgaattgtgcattttttttaatttttaatttttttttggttttttgaga
cagggtttttctgtgtatccctggctgtcctggaactcactctgtagacc
aggctggccttgaactcagaaattcacctgcctctgcctcccaagtgctg
ggattaaaggcgtgcgccaccatgcccggcttgaattgtgcattttaaaa
attctattctgatgtaattatcaaagaacaactgtctttgaactatatgt
gtaggtgggagaacttggagaactttacatgctaaaggatggtaatgggt
tgaaagtacttttccctccatgttctttggatggaaatatgggagtacat
atattggtacttttgcatatatattttcatgttaaaataggctgttctct
ttatatcagaaactattaaatagatattcatctttatttggttgcttgta
ttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121072
seq2: B6Ng01-146H08.b_59_545

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTCTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||| |||||||||||||||||||| ||| |||
seq2  CTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCGCCC  100

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  150
      |||||||||||||||||||||  ||||||||| |||||||||||||||||
seq2  ACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTT  150

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  250
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCA  250

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  300
      ||| |||| |||||||||||||||| |||||||||||||||||||| |||
seq2  TAATGTTGATCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTAC  300

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACT  350

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  400
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGGGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAG  400

seq1  ACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGG  450
      |||||||||||||  ||||||| |||||||||||||||||||||||||||
seq2  ACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGG  450

seq1  TGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCT  487
      |||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCT  487

seq1: chr16_44796447_44797517
seq2: B6Ng01-146H08.g_65_1119

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTATTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTATTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CCCCTGTGCCCATATCTTCGCATTTTTATTATTAATAGATCAGTCAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGCCCATATCTTCGCATTTTTATTATTAATAGATCAGTCAAGCT  300

seq1  GTCAGTTTACATTTTCTCCAATTGTGTTTGAATGTGCCTTTCTTCATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTACATTTTCTCCAATTGTGTTTGAATGTGCCTTTCTTCATATT  350

seq1  CTTATTATTATTCTTATTCTTATTCTTATATTTTTATATTCTTACTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATTATTCTTATTCTTATTCTTATATTTTTATATTCTTACTTTCA  400

seq1  CATTTATACTTTCCATGTTTAATTAACCAGATGGGTGATATGTCTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACTTTCCATGTTTAATTAACCAGATGGGTGATATGTCTTACAT  450

seq1  TTATGATATTGACTCAATTATTTAATGGAACTGGACTCATATCTTTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATATTGACTCAATTATTTAATGGAACTGGACTCATATCTTTGTCA  500

seq1  ACATGAGAGAGACAGGAAGCATTTGTAATGACAGTATTTTCAACTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAGAGACAGGAAGCATTTGTAATGACAGTATTTTCAACTCTTTG  550

seq1  TATTGCTACAAAAGTGCTGCCATATCATGCACAACAGTTTTATGGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTACAAAAGTGCTGCCATATCATGCACAACAGTTTTATGGACATT  600

seq1  ATGAATTGTGCATTTTTTTTAATTTTTAATTTTTTTTTGGTTTTTTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGTGCATTTTTTTTAATTTTTAATTTTTTTTTGGTTTTTTGAGA  650

seq1  CAGGGTTTTTCTGTGTATCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTTTCTGTGTATCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  700

seq1  AGGCTGGCCTTGAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTGAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTG  750

seq1  GGATTAAAGGCGTGCGCCACCATGCCCGGCTTGAATTGTGCATTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCGTGCGCCACCATGCCCGGCTTGAATTGTGCATTTTAAAA  800

seq1  ATTCTATTCTGATGTAATTATCAAAGAACAACTGTCTTTGAACTATATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTCTGATGTAATTATCAAAGAACAACTGTCTTTGAACTATATGT  850

seq1  GTAGGTGGGAGAACTTGGAGAACTTTACATGCTAAAAGGATGGTAATGGG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAGGTGGGAGAACTTGGAGAACTTTACATGCT-AAAGGATGGTAATGGG  899

seq1  TTGAAAGTAACTTTTCCCTCCATTGTTCTTTGGATGGAAATATTGGGAGT  950
      |||||||| ||||||||||||| ||||||||||||||||||| |||||||
seq2  TTGAAAGT-ACTTTTCCCTCCA-TGTTCTTTGGATGGAAATA-TGGGAGT  946

seq1  ACATATATTGGTAACTTTTAGCATATATATTTTCATTGTTAAAAATAAGC  1000
      |||||||||||| |||||| ||||||||||||||| ||||||||   || 
seq2  ACATATATTGGT-ACTTTT-GCATATATATTTTCA-TGTTAAAA--TAGG  991

seq1  CTGTTCTCTTTATATCAGAAAAACTATTAAAATAGATTTATTCATCTTAT  1050
      ||||||||||||||||||  |||||||| |||||||  ||||||||||  
seq2  CTGTTCTCTTTATATCAG--AAACTATT-AAATAGA--TATTCATCTTTA  1036

seq1  TTTGTTTGCTTTGTTATTTTG  1071
      |||| ||||||   |||||||
seq2  TTTGGTTGCTT--GTATTTTG  1055