BAC Information

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BAC

Clone NameB6Ng01-147H07
Chromosome3 (Build37)Y (Build37)
Map Location 73,727,783 - 73,728,864573,413 - 573,483
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3, Bche
Downstream geneLOC667425, LOC619764, LOC667434, LOC100041551, EG667459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147H07.bB6Ng01-147H07.g
ACCDH944334DH944335
length1,08699
definitionDH944334|Mus musculus domesticus DNA, BAC clone: B6Ng01-147H07, 5' end.DH944335|Mus musculus domesticus DNA, BAC clone: B6Ng01-147H07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,727,783 - 73,728,864)(573,413 - 573,483)
sequence
ggaattcaaatagtaacacttcctttctgtgtcagaactttgaaagcaat
acagaatgagcagtgagaaaagttctgtttccctgtttatatttagaaga
aatgctctggtttgttttttggttttagatgaacttttatagatttcagg
acagttaacagagtgactcatactaaaattcacatttttataggacattg
tcaattatttgattattttctcttcatttcttcttatctatgttttactt
aatttttgtactttataaatattaatgaatagaaaatgatattttaatca
tttccatttatttaagggattattcaatctgaacgtagtataaggacaaa
gcaatcatgtattgccagttctgtatgtatgtttatgccacttttgacat
actgtcaccttatcaggtccattgctagtcttataaaaatatgatatttt
ataagtacattaactatacaaataatacacttcaccatgagattgccata
tatgtatataatgtccattcatcatatctttgccatcatttctatattct
tattccatttctcatctttttctcctaaaatgcctcacacacctccattc
tgggttacttaacatgtagtttcttctttagcttgttgggttctctcaat
aatcactttaaaggtagaaatctaggttcaaccctgattttgtatgtgtg
tcccccatatatatgtccagtgcccgtctacaccttgtcaagaagaatgg
aactataaaaattttcacctaaataaaccttttgctaactttctcatctt
tctaacgattctcatctatctttccacattcaatgcagtaagtaactatg
tgattcttcatgacctacattgttgtcagtccctaaaatttgtttctttt
ccaccagcacacattggcaattctccattagaaactaggagtgtagtcaa
ctgaggcttcttgcttgagaataactgctgatctcttcctcaattcggat
tctcatcataagaagtaatctagttccagacttgagttttaatcttccca
gtgcatacaatgatattttgtggccaagagtcacca
acctacaatggggaattgagcctttacatgaccaagggcctctcctccca
ttgatggctgacaaggccatcctctgatacatatgcagctagagccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73727783_73728864
seq2: B6Ng01-147H07.b_46_1131 (reverse)

seq1  TGCTGACTCTT-GCCAC-AAATATC-TTGTATTGCACTGAGAAGA-TAAA  46
      || |||||||| ||||| ||||||| ||||| ||||||| ||||| ||||
seq2  TGGTGACTCTTGGCCACAAAATATCATTGTA-TGCACTGGGAAGATTAAA  49

seq1  ACTCAAGTCTGGAACCTAGATAAC-TCTTATGATGAGAATCAGAATTGAG  95
      |||||||||||||| |||||| || |||||||||||||||| ||||||||
seq2  ACTCAAGTCTGGAA-CTAGATTACTTCTTATGATGAGAATCCGAATTGAG  98

seq1  GAAGGAGATCAGCAGTTATTCTCAAGCAAGAAGCCTCAGTTGACTACACT  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAA-GAGATCAGCAGTTATTCTCAAGCAAGAAGCCTCAGTTGACTACACT  147

seq1  CCTAGTTTCTAATGGAGAAATGCC-ATGTGTGCTGGTGGAAAAGAAAACA  194
      ||||||||||||||||||| |||| ||||||||||||||||||| |||||
seq2  CCTAGTTTCTAATGGAGAATTGCCAATGTGTGCTGGTGGAAAAG-AAACA  196

seq1  AATTTTA-GGACTGACAACAATGTAGGTCATGAAGAATCACATAGTTAC-  242
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTTTAGGGACTGACAACAATGTAGGTCATGAAGAATCACATAGTTACT  246

seq1  TACTGCATTGAATGTGGAAAGATAGATGAGAATCGTTAGAAAGATGAGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATTGAATGTGGAAAGATAGATGAGAATCGTTAGAAAGATGAGAA  296

seq1  AGTTAGCAAAAGGTTTATTTAGGTGAAAATTTTTATAGTTCCATTCTTCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCAAAAGGTTTATTTAGGTGAAAATTTTTATAGTTCCATTCTTCT  346

seq1  TGACAAGGTGTAGACGGGCACTGGACATATATATGGGGGACACACATACA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTGTAGACGGGCACTGGACATATATATGGGGGACACACATACA  396

seq1  AAATCAGGGTTGAACCTAGATTTCTACCTTTAAAGTGATTATTGAGAGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGGTTGAACCTAGATTTCTACCTTTAAAGTGATTATTGAGAGAA  446

seq1  CCCAACAAGCTAAAGAAGAAACTACATGTTAAGTAACCCAGAATGGAGGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAAGCTAAAGAAGAAACTACATGTTAAGTAACCCAGAATGGAGGT  496

seq1  GTGTGAGGCATTTTAGGAGAAAAAGATGAGAAATGGAATAAGAATATAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGCATTTTAGGAGAAAAAGATGAGAAATGGAATAAGAATATAGA  546

seq1  AATGATGGCAAAGATATGATGAATGGACATTATATACATATATGGCAATC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGCAAAGATATGATGAATGGACATTATATACATATATGGCAATC  596

seq1  TCATGGTGAAGTGTATTATTTGTATAGTTAATGTACTTATAAAATATCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGAAGTGTATTATTTGTATAGTTAATGTACTTATAAAATATCAT  646

seq1  ATTTTTATAAGACTAGCAATGGACCTGATAAGGTGACAGTATGTCAAAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATAAGACTAGCAATGGACCTGATAAGGTGACAGTATGTCAAAAG  696

seq1  TGGCATAAACATACATACAGAACTGGCAATACATGATTGCTTTGTCCTTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAACATACATACAGAACTGGCAATACATGATTGCTTTGTCCTTA  746

seq1  TACTACGTTCAGATTGAATAATCCCTTAAATAAATGGAAATGATTAAAAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACGTTCAGATTGAATAATCCCTTAAATAAATGGAAATGATTAAAAT  796

seq1  ATCATTTTCTATTCATTAATATTTATAAAGTACAAAAATTAAGTAAAACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTCTATTCATTAATATTTATAAAGTACAAAAATTAAGTAAAACA  846

seq1  TAGATAAGAAGAAATGAAGAGAAAATAATCAAATAATTGACAATGTCCTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAGAAGAAATGAAGAGAAAATAATCAAATAATTGACAATGTCCTA  896

seq1  TAAAAATGTGAATTTTAGTATGAGTCACTCTGTTAACTGTCCTGAAATCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTGAATTTTAGTATGAGTCACTCTGTTAACTGTCCTGAAATCT  946

seq1  ATAAAAGTTCATCTAAAACCAAAAAACAAACCAGAGCATTTCTTCTAAAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTCATCTAAAACCAAAAAACAAACCAGAGCATTTCTTCTAAAT  996

seq1  ATAAACAGGGAAACAGAACTTTTCTCACTGCTCATTCTGTATTGCTTTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGGGAAACAGAACTTTTCTCACTGCTCATTCTGTATTGCTTTCA  1046

seq1  AAGTTCTGACACAGAAAGGAAGTGTTACTATTTGAATTCC  1082
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGACACAGAAAGGAAGTGTTACTATTTGAATTCC  1086

seq1: chrY_573413_573483
seq2: B6Ng01-147H07.g_104_173 (reverse)

seq1  CATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATT  50
      |||| |||||||||||||||||||||| |||||||| ||  ||||||| |
seq2  CATGGCTCTAGCTGCATATGTATCAGAGGATGGCCTTGTCAGCCATCAAT  50

seq1  GGGAAGAGAGGCCCCTTGGTC  71
      |||| |||||| |||||||||
seq2  GGGAGGAGAGG-CCCTTGGTC  70