BAC Information

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BAC

Clone NameB6Ng01-150A23
ChromosomeY (Build37)9 (Build37)
Map Location 2,430,625 - 2,430,677106,347,604 - 106,348,753
singlet/doubletsingletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150A23.bB6Ng01-150A23.g
ACCDH946236DH946237
length4161,133
definitionDH946236|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A23, 5' end.DH946237|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,430,625 - 2,430,677)(106,347,604 - 106,348,753)
sequence
aacgttgtgagcctccgcagtaacagtgcccactgcacaaacgaagcttc
tctgaacaaagctgactgcagccgtgatctaagagcacaagtggaacgat
tcagaaagcagatcccaggtgcatcatgtcattcagcaagacaacagcag
gcgcttcccctcctaggaccttgggacctctccagtcacaggtcaggtct
gtagaagcctcccatggatcacacctcaaattcaagaagaaagtcgttgg
ctaacttcttaacagtcatgccacttgttagcaagttagcattccttcta
ggctctgcccagttacctagcaacagccaggtaggagcctggcttgctat
taaaaaaagctgttctctctctctctctctctctctctctctctctctct
ctctctctctctcttt
gaattcccctctgccttgagctgagttctgtaacttgggataacttcctg
gtggtacctgcccaagcttcttgggagatttacacaatacactccaccta
agctgttggagatggggtgtccccgtcatcatttgctgggcctgagacga
ccgtgcttgtcttactctgggattctgggtgcatctttactgagtgtaaa
caaagtgtgtggggtagggctaggagctggggcccacctggggccacacc
cacctctgtggaactcttctgcaggcctcactccctagctccgaagtcag
gctgtgcgtgggcttcagcagatcttccagtgctgatagaaaatcaggag
ccgggtgcagaaagagcacactcttcctcctaacctggagcagccaaggc
tgcctgtctccagtgcagctttcccaagaggcggaacatccggatggacc
actcttagtgtcccatccttctttcagggtcaaggggtggggtttcactc
gttgccatggcaacttgggtgcccaagactagacaactgtaggggttctg
atgcagactgcactgcgggtggaagaggttggaggtaaactgtgcttgct
ctggttaccgaaatgcccctcttccacagcacacagtgtgcacacactca
taacagacacaagagcctggcttccacacacttttcaagaagctatcccc
taaatgtaccatagcctctttgcacacccatttggtttatgcagtcacac
ttgtacactaacacccataaatcccatacatgggtgcgttaacagtctct
tccaaagtcaaaatatttcatgctgcagaggagctccttaagcagggagg
tgaacagccagaaatcagcttcaagaactcccctgaaactgatcagattc
actagagccctcctgccagagtaaaccacaaaagctgagagagacccctc
tccaccacataaagctaagctgcaaagaagctctccgagagcacgcagct
ccctaagaagcagaaatcagccgagctgcctacaataggttcacacagcc
tgagcactggaaagacccctccccaacagagagctgctgctggctgtgcg
ggtcgtcagtttgtgaacttcaccctgtttcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2430625_2430677
seq2: B6Ng01-150A23.b_415_467

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  TTT  53
      |||
seq2  TTT  53

seq1: chr9_106347604_106348753
seq2: B6Ng01-150A23.g_70_1202

seq1  GAATTCCCCTCTGCCTTGAGCTGAGTTCTGTAACTTGGGATAACTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCTGCCTTGAGCTGAGTTCTGTAACTTGGGATAACTTCCTG  50

seq1  GTGGTACCTGCCCAAGCTTCTTGGGAGATTTACACAATACACTCCACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACCTGCCCAAGCTTCTTGGGAGATTTACACAATACACTCCACCTA  100

seq1  AGCTGTTGGAGATGGGGTGTCCCCGTCATCATTTGCTGGGCCTGAGACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTGGAGATGGGGTGTCCCCGTCATCATTTGCTGGGCCTGAGACGA  150

seq1  CCGTGCTTGTCTTACTCTGGGATTCTGGGTGCATCTTTACTGAGTGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCTTGTCTTACTCTGGGATTCTGGGTGCATCTTTACTGAGTGTAAA  200

seq1  CAAAGTGTGTGGGGTAGGGCTAGGAGCTGGGGCCCACCTGGGGCCACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTGTGGGGTAGGGCTAGGAGCTGGGGCCCACCTGGGGCCACACC  250

seq1  CACCTCTGTGGAACTCTTCTGCAGGCCTCACTCCCTAGCTCCGAAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGTGGAACTCTTCTGCAGGCCTCACTCCCTAGCTCCGAAGTCAG  300

seq1  GCTGTGCGTGGGCTTCAGCAGATCTTCCAGTGCTGATAGAAAATCAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCGTGGGCTTCAGCAGATCTTCCAGTGCTGATAGAAAATCAGGAG  350

seq1  CCGGGTGCAGAAAGAGCACACTCTTCCTCCTAACCTGGAGCAGCCAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGCAGAAAGAGCACACTCTTCCTCCTAACCTGGAGCAGCCAAGGC  400

seq1  TGCCTGTCTCCAGTGCAGCTTTCCCAAGAGGCGGAACATCCGGATGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTCCAGTGCAGCTTTCCCAAGAGGCGGAACATCCGGATGGACC  450

seq1  ACTCTTAGTGTCCCATCCTTCTTTCAGGGTCAAGGGGTGGGGTTTCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTGTCCCATCCTTCTTTCAGGGTCAAGGGGTGGGGTTTCACTC  500

seq1  GTTGCCATGGCAACTTGGGTGCCCAAGACTAGACAACTGTAGGGGTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATGGCAACTTGGGTGCCCAAGACTAGACAACTGTAGGGGTTCTG  550

seq1  ATGCAGACTGCACTGCGGGTGGAAGAGGTTGGAGGTAAACTGTGCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACTGCACTGCGGGTGGAAGAGGTTGGAGGTAAACTGTGCTTGCT  600

seq1  CTGGTTACCGAAATGCCCCTCTTCCACAGCACACAGTGTGCACACACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTACCGAAATGCCCCTCTTCCACAGCACACAGTGTGCACACACTCA  650

seq1  TAACAGACACAAGAGCCTGGCTTCCACACACTTTTCAAGAAGCTATCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACACAAGAGCCTGGCTTCCACACACTTTTCAAGAAGCTATCCCC  700

seq1  TAAATGTACCATAGCCTCTTTGCACACCCATTTGGTTTATGCAGTCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTACCATAGCCTCTTTGCACACCCATTTGGTTTATGCAGTCACAC  750

seq1  TTGTACACTAACACCCATAAATCCCATACATGGGTGCGTTAACAGTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACACTAACACCCATAAATCCCATACATGGGTGCGTTAACAGTCTCT  800

seq1  TCCAAAGTCAAAATATTTCATGCTGCAGAGGAGCTCCTTAAGCAGGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTCAAAATATTTCATGCTGCAGAGGAGCTCCTTAAGCAGGGAGG  850

seq1  TGAACAGCCAGAAATCAGCTTCAAGAACTCCCCTGAAACTGATCAGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCCAGAAATCAGCTTCAAGAACTCCCCTGAAACTGATCAGATTC  900

seq1  ACTAGAGCCCTCCCTGCCAGAGTAAACCACAAAAGCTGAGAGAGAACCCC  950
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  ACTAGAGCCCT-CCTGCCAGAGTAAACCACAAAAGCTGAGAGAG-ACCCC  948

seq1  TCTCCCACCACATAAAGCTAAGCTGCAAAGAAGCCTCCTCCGAGAGCACG  1000
      ||| ||||||||||||||||||||||||||||||   |||||||||||||
seq2  TCT-CCACCACATAAAGCTAAGCTGCAAAGAAGC--TCTCCGAGAGCACG  995

seq1  CCAGCTCCCCAAAGAAGCAGAAACCAGCCGAGCTGCCTACAATAGGTTCA  1050
       ||||| ||| |||||||||||| ||||||||||||||||||||||||||
seq2  -CAGCT-CCCTAAGAAGCAGAAATCAGCCGAGCTGCCTACAATAGGTTCA  1043

seq1  CACCAGCTGAGGCACTTGGGAAAGA-CACTCCCCAACCAGGAGAGCTGCC  1099
      |||   |||| |||||  ||||||| | |||||||||   |||||||| |
seq2  CACAGCCTGA-GCACT--GGAAAGACCCCTCCCCAAC--AGAGAGCTG-C  1087

seq1  TGCTGGCTGTGCGGTGTGTCCACGTTTTGTGAACTGTCACCCCTGTTTCG  1149
      ||||||||||||||   |||  |  |||||||||| ||| ||||||||||
seq2  TGCTGGCTGTGCGG---GTCGTCAGTTTGTGAACT-TCA-CCCTGTTTCG  1132

seq1  G  1150
      |
seq2  G  1133