BAC Information

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BAC

Clone NameB6Ng01-150D09
ChromosomeY (Build37)6 (Build37)
Map Location 1,120,568 - 1,120,79665,114,353 - 65,115,376
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150D09.bB6Ng01-150D09.g
ACCDH946350DH946351
length6101,014
definitionDH946350|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D09, 5' end.DH946351|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,568 - 1,120,796)(65,114,353 - 65,115,376)
sequence
gaattccttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtatcttttgccttgcagaaactttggagtttct
ttaggtcccatttgtcaattctcgatcttttttttttttttttttttttt
tttttttttttttgatcattaggattaattttattgttaattttttttcc
attttttattaggtatttaactcatttacatttccaatgctataccaaaa
gtccccaaaacccacccacccccactcccctaaccacccactcccccttt
ttggccctggcgttcccctgttctggggcatataaagtttgtgtgtccaa
tgggcctctctttccagtgatggccgactaggccatcctttgatacatat
gcagctagagtcaaaaactctggggtactggttagttcataatgttgatc
cacctatagagttgcagatccctttagctccttgggtactttctctagct
cctccattgg
gaattctaaggcagaagttgaaattttaagtcctagcaaacaaagttaga
caagactacgaaagcatacagcttatgtaagaaaggaagagacaggtctg
tggctctgtggctggatgcttgctaccatgtccttcaaaggccagggctt
gacttcacacacacacacacacacacacacacacacacacacacacacac
acaaacacacacacacacacacacacacacacacaaacacacacacaaac
acacacacacacacacacacacacacacacacaaacacacacacacacac
acacacacaaacacacacacacacacacacacaaacacacacacacacac
aaacacacacacacacacacacaccacacacaaacacacacacacacaca
caaacacacacacacacacacaaacacacacacacacacacacacacaca
caccacacacacacacacacacacacacaaacacacacacacaaacacac
acacacacacacacaaacacacacacacacacaaacacacacacacacac
acacacacactcctgcaagtaaaaaaaaatgcagtaaataatgaacaaag
ccattctagaaataatttcctgcccccctccccccaaaagacacaatttt
gcttcgagttatttggctcttcatactcccgagacacacagaagaaaagt
ttaaaactggagctgtctctaaccgtggagagtcagtttatgaatgcaca
aagggcctgctttgggaagtcttcacatttagccagtacgcacattttaa
aaatagtccacaggaagctgtggtgtcaatccagttccctaccagtttgg
agagcaaacccagagcttgtcaggagaccagggagttgtgggacgtatac
aatgcccgagggttgtctttggaaaccaccaccttgccaaacaggcttaa
tgaatttgtaaactggagtgacttgtaccgagcacaggataaccttccca
gtgaaaacctcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120568_1120796
seq2: B6Ng01-150D09.b_295_545

seq1  TTTTTTTTTTTTTT-----------TTAAT-----------TTTTTTTTC  28
      ||||||||||||||           |||||           |||||||||
seq2  TTTTTTTTTTTTTTGATCATTAGGATTAATTTTATTGTTAATTTTTTTTC  50

seq1  CATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAA  78
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAA  100

seq1  AGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTT  128
      ||||||| | | ||||||||||||||||||||  ||||||||||||||||
seq2  AGTCCCCAAAACCCACCCACCCCCACTCCCCTAACCACCCACTCCCCCTT  150

seq1  TTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCA  178
      |||||||||||  ||||||||| |||||||||||||||||||   |||||
seq2  TTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCA  200

seq1  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATA  228
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCCTTTGATACATA  250

seq1  T  229
      |
seq2  T  251

seq1: chr6_65114353_65115376
seq2: B6Ng01-150D09.g_69_1082

seq1  GAATTCTAAGGCAGAAGTTGAAATTTTAAGTCCTAGCAAACAAAGTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGCAGAAGTTGAAATTTTAAGTCCTAGCAAACAAAGTTAGA  50

seq1  CAAGACTACGAAAGCATACAGCTTATGTAAGAAAGGAAGAGACAGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTACGAAAGCATACAGCTTATGTAAGAAAGGAAGAGACAGGTCTG  100

seq1  TGGCTCTGTGGCTGGATGCTTGCTACCATGTCCTTCAAAGGCCAGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGTGGCTGGATGCTTGCTACCATGTCCTTCAAAGGCCAGGGCTT  150

seq1  GACTTCACACACACACACACACACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCACACACACACACACACACACACACACACACACACACACACACAC  200

seq1  ACAAACACACACACACACACACACACACACACACAAACACACACACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACACACACACACACACACACACACACACAAACACACACACAAAC  250

seq1  ACACACACACACACACACACACACACACACACAAACACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACAAACACACACACACACAC  300

seq1  ACACACACAAACACACACACACACACACACACAAACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAACACACACACACACACACACACAAACACACACACACACAC  350

seq1  AAACACACACACACACACACACACCACACACAAACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACACACACACACACACCACACACAAACACACACACACACACA  400

seq1  CAAACACACACACACACACACAAACACACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACACACACACACACAAACACACACACACACACACACACACACA  450

seq1  CACCACACACACACACACACACACACACAAACACACACACACAAACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACACACACACACACACACACACAAACACACACACACAAACACAC  500

seq1  ACACACACACACACAAACACACACACACACACAAACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAAACACACACACACACACAAACACACACACACACAC  550

seq1  ACACACACACTCCTGCAAGTAAAAAAAAATGCAGTAAATAATGAACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTCCTGCAAGTAAAAAAAAATGCAGTAAATAATGAACAAAG  600

seq1  CCATTCTAGAAATAATTTCCTGCCCCCCTCCCCCCAAAAGACACAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTAGAAATAATTTCCTGCCCCCCTCCCCCCAAAAGACACAATTTT  650

seq1  GCTTCGAGTTATTTGGTTCTTCATACTCCCGAGACACACAGAAAGAAAAG  700
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  GCTTCGAGTTATTTGGCTCTTCATACTCCCGAGACACACAG-AAGAAAAG  699

seq1  TTTAAAACTGGAGCTGTTTCTAAACCATGGAGAGTCAGTTTATGAAATGC  750
      ||||||||||||||||| ||| |||| ||||||||||||||||| |||||
seq2  TTTAAAACTGGAGCTGTCTCT-AACCGTGGAGAGTCAGTTTATG-AATGC  747

seq1  ACAAAGGGCCTGCTTTTGGGAAGTCTTCACATTTAGCCAGTAGGCACATT  800
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  ACAAAGGGCCTGC-TTTGGGAAGTCTTCACATTTAGCCAGTACGCACATT  796

seq1  TTAAAAATAGTCCACAGGAAGCTGTTGGTGTCAATTCCAGTT-CCTACCA  849
      |||||||||||||||||||||||| ||||||||| ||||||| |||||||
seq2  TTAAAAATAGTCCACAGGAAGCTG-TGGTGTCAA-TCCAGTTCCCTACCA  844

seq1  GTTTGGAGAGCAAACCCAGAGC-TGTCAGGAGACCAGGGAGTTGT-GGAC  897
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  GTTTGGAGAGCAAACCCAGAGCTTGTCAGGAGACCAGGGAGTTGTGGGAC  894

seq1  GTTATACAAATGGCCGAAGGTTGTCCTTTGGAGA-CACCACC-TGCCAGA  945
      | ||||| |||| |||| |||||| ||||||| | ||||||| ||||| |
seq2  G-TATAC-AATGCCCGAGGGTTGT-CTTTGGAAACCACCACCTTGCCAAA  941

seq1  CAAGGCGTAAATGAGATTTGTAAGACTGAAGTGACTTGTAACAGAGCACA  995
      | |||| | ||||| |||||||| |||| |||||||||| || |||||||
seq2  C-AGGC-TTAATGA-ATTTGTAA-ACTGGAGTGACTTGT-ACCGAGCACA  986

seq1  GGGATTACCATCCCAGTGACAAACTCCTC  1024
       |||| ||| ||||||||| || ||||||
seq2  -GGATAACCTTCCCAGTGAAAACCTCCTC  1014