BAC Information

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BAC

Clone NameB6Ng01-151G07
ChromosomeY (Build37)1 (Build37)
Map Location 1,870,346 - 1,870,575103,559,612 - 103,560,126
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151G07.bB6Ng01-151G07.g
ACCDH947221DH947222
length494509
definitionDH947221|Mus musculus domesticus DNA, BAC clone: B6Ng01-151G07, 5' end.DH947222|Mus musculus domesticus DNA, BAC clone: B6Ng01-151G07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,575)(103,559,612 - 103,560,126)
sequence
agaacaaaacactcatggaaggagttacagagacaaagtttggagctgag
acaaaaggatggaccatctagagactgccatatccagggatccatcctat
aatcagcctccaaatgctgacaccattgcatacactagcatgattttgct
gataggacgctgatatagctgtctctagtgagactcccctggggcctaga
aaacacataagtggatgctcacagtcagctattcgatggatcacagagcc
cacaatggaggagctagagaaaatatccaaggagctaaagggatctgcaa
ccctataagtggagcaacattatgaactaaccagtaccctggatctcttc
actctagctgcacatgtattaaaagatggcctagtcggccatcactggaa
agagaggcccattggacttgcaaactttatatgccccagtacaggggaac
gccagggccaaaaggtgggagtgcgtgggtaggggagtgggggg
ttactttccattttcatatataattttgagggatattggttaagtatcaa
ttatggcttcaaaatccacaactttattctggatgtcaaacctgattctt
gtttactcctaacctttcttggacctcaaagataatattttaattaactt
tctctgatcctttgaacacaaccaaggtggtttcagtgaagaaatgagag
tgtgaggatgccaaggtagggaggagattcataaaaagggtagtaaaaat
tgatgaagtaattgaaagtatttaattgatacttctgttcacagtaatca
gagcaactgatggctgagtgaatcaaagatggctacatgaatcagagaaa
ctgaaaggtagatgttctgcttactaaaaataaatctgtctggggaaatc
attcagtgggtaaaatactgctgtgacaacatgagaccctgagttcaaat
tcatgctgctttcaaaaaccagcaataagtatgtgtgtgtgtgtgtgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870575
seq2: B6Ng01-151G07.b_316_545

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| || ||||||||||||||||||||||||||||||| |||||
seq2  CTAGAGAAAATATCCAAGGAGCTAAAGGGATCTGCAACCCTATAAGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
       ||||||||||||||||||| |||||  || ||||| ||||| |||||| 
seq2  GCAACATTATGAACTAACCAGTACCCTGGATCTCTTCACTCTAGCTGCAC  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
       | || |||| |||||||||||||||||||
seq2  GGTGGGAGTGCGTGGGTAGGGGAGTGGGGG  230

seq1: chr1_103559612_103560126
seq2: B6Ng01-151G07.g_67_581 (reverse)

seq1  CACACACACACACACACACACACACACATACTTATTGCTGGTTTTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACATACTTATTGCTGGTTTTTGAAA  50

seq1  GCAGCATGAATTTGAACTCAGGGTCTCATGTTGTCACAGCAGTATTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATGAATTTGAACTCAGGGTCTCATGTTGTCACAGCAGTATTTTAC  100

seq1  CCACTGAATGATTTCCCCAGACAGATTTATTTTTAGTAAGCAGAACATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAATGATTTCCCCAGACAGATTTATTTTTAGTAAGCAGAACATCT  150

seq1  ACCTTTCAGTTTCTCTGATTCATGTAGCCATCTTTGATTCACTCAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCAGTTTCTCTGATTCATGTAGCCATCTTTGATTCACTCAGCCAT  200

seq1  CAGTTGCTCTGATTACTGTGAACAGAAGTATCAATTAAATACTTTCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTCTGATTACTGTGAACAGAAGTATCAATTAAATACTTTCAATT  250

seq1  ACTTCATCAATTTTTACTACCCTTTTTATGAATCTCCTCCCTACCTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCAATTTTTACTACCCTTTTTATGAATCTCCTCCCTACCTTGGC  300

seq1  ATCCTCACACTCTCATTTCTTCACTGAAACCACCTTGGTTGTGTTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCACACTCTCATTTCTTCACTGAAACCACCTTGGTTGTGTTCAAAG  350

seq1  GATCAGAGAAAGTTAATTAAAATATTATCTTTGAGGTCCAAGAAAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGAAAGTTAATTAAAATATTATCTTTGAGGTCCAAGAAAGGTTA  400

seq1  GGAGTAAACAAGAATCAGGTTTGACATCCAGAATAAAGTTGTGGATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAACAAGAATCAGGTTTGACATCCAGAATAAAGTTGTGGATTTTG  450

seq1  AAGCCATAATTGATACTTAACCAATATCCCTCAAAATTATATATGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATAATTGATACTTAACCAATATCCCTCAAAATTATATATGAAAAT  500

seq1  GGAAAGTAAGAATTC  515
      |||||||||||||||
seq2  GGAAAGTAAGAATTC  515