BAC Information

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BAC

Clone NameB6Ng01-151I06
Chromosome19 (Build37)Y (Build37)
Map Location 27,949,727 - 27,950,549573,321 - 573,360
singlet/doubletsingletsinglet
Overlap geneRfx3
Upstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, LOC666997
Downstream geneLOC433235, Glis3, EG434460, EG627788, Slc1a1, LOC545262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151I06.bB6Ng01-151I06.g
ACCDH947315DH947316
length823500
definitionDH947315|Mus musculus domesticus DNA, BAC clone: B6Ng01-151I06, 5' end.DH947316|Mus musculus domesticus DNA, BAC clone: B6Ng01-151I06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,949,727 - 27,950,549)(573,321 - 573,360)
sequence
gaattcatttggaaaagcaagtgaaattaagagatgaactttaagaccag
tgtaattaattttttctaaggacctggataagggataatagcagcagatg
tgtcagcttagagattgtacagagatttggggataagggccttggagatg
ctgatgaaatgctgacaggagttagtttcctagctccatcagaaatgctt
acttgaattttcctgcattcacctaatggagatcaaagtggaaatcaggt
tctaatgcacagccttttaacacagatccaaacatcgcttaatgttcaac
agaataacaattaatacttgagaaatttgaatcagttgttttagaaagtg
agaatagcgtgcaatgtaaaaaattctcttcatttttagtgcagttgaag
cagcagttaaaaatggtctcatccagagaatgcagaaatgactgttgaga
gcacttgtggtttgtccagtggatgtgagtccaggtcccagcactcatct
caaacagctcacaactgctttcaactctagctccaatagtgtctggagat
acacacgtgcatacaaataggataccctcacacaatatatctatgtaaat
aaaatatgtctttaaaagttgttttgtttactttcaaataatgttccaca
gtagctctattcttcaataaaagttgatacctaagtttagaagataatat
atttattttataaatattcattagtaattcatttgtaatgtatagtgcat
tatttaactattgagtatttatacatatatatgtatatgtgtatatatat
atatgtgtgtgtgtgtgtgggtg
gaattctttgtttagctctctgtaccccattttaaatggggttatttgaa
tttctggagttcagcttcttgagctctttgtatacattggatattagccc
cctatcagattaggattagtaaaaattctttcccaatctgttggtggcct
tttggtcttattgacagtttctcaatgcgtggatacttcattcctcccta
gaatagggaataaaatacccatggaaggagttacagagacaaagtttgga
gctaagacgaaaggatggactatccagagactaccccacctgggggtcca
tcccaaagtcagccaccaaacgcaaacactattgcatatgccagcaagat
tttgctgaaaggaccctgatatagctgtctcttgtgaggctatgccagtg
cctggctaatacagaagtggatgctcacagtcatctatagaatggaacac
agggcccccaatggaggagcttgagaaagtacccaaggagctaaagggct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27949727_27950549
seq2: B6Ng01-151I06.b_45_867 (reverse)

seq1  CACACACACACACACACACATATATATATATACACATATACATATATATG  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACACACACACACATATATATATATACACATATACATATATATG  50

seq1  TATAAATACTCAATAGTTAAATAATGCACTATACATTACAAATGAATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACTCAATAGTTAAATAATGCACTATACATTACAAATGAATTAC  100

seq1  TAATGAATATTTATAAAATAAATATATTATCTTCTAAACTTAGGTATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATATTTATAAAATAAATATATTATCTTCTAAACTTAGGTATCAA  150

seq1  CTTTTATTGAAGAATAGAGCTACTGTGGAACATTATTTGAAAGTAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGAAGAATAGAGCTACTGTGGAACATTATTTGAAAGTAAACAA  200

seq1  AACAACTTTTAAAGACATATTTTATTTACATAGATATATTGTGTGAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTTTAAAGACATATTTTATTTACATAGATATATTGTGTGAGGGT  250

seq1  ATCCTATTTGTATGCACGTGTGTATCTCCAGACACTATTGGAGCTAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTTGTATGCACGTGTGTATCTCCAGACACTATTGGAGCTAGAGT  300

seq1  TGAAAGCAGTTGTGAGCTGTTTGAGATGAGTGCTGGGACCTGGACTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGTTGTGAGCTGTTTGAGATGAGTGCTGGGACCTGGACTCACA  350

seq1  TCCACTGGACAAACCACAAGTGCTCTCAACAGTCATTTCTGCATTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGACAAACCACAAGTGCTCTCAACAGTCATTTCTGCATTCTCTG  400

seq1  GATGAGACCATTTTTAACTGCTGCTTCAACTGCACTAAAAATGAAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGACCATTTTTAACTGCTGCTTCAACTGCACTAAAAATGAAGAGAA  450

seq1  TTTTTTACATTGCACGCTATTCTCACTTTCTAAAACAACTGATTCAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACATTGCACGCTATTCTCACTTTCTAAAACAACTGATTCAAATT  500

seq1  TCTCAAGTATTAATTGTTATTCTGTTGAACATTAAGCGATGTTTGGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTATTAATTGTTATTCTGTTGAACATTAAGCGATGTTTGGATCT  550

seq1  GTGTTAAAAGGCTGTGCATTAGAACCTGATTTCCACTTTGATCTCCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAAAGGCTGTGCATTAGAACCTGATTTCCACTTTGATCTCCATTA  600

seq1  GGTGAATGCAGGAAAATTCAAGTAAGCATTTCTGATGGAGCTAGGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGCAGGAAAATTCAAGTAAGCATTTCTGATGGAGCTAGGAAACT  650

seq1  AACTCCTGTCAGCATTTCATCAGCATCTCCAAGGCCCTTATCCCCAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGTCAGCATTTCATCAGCATCTCCAAGGCCCTTATCCCCAAATC  700

seq1  TCTGTACAATCTCTAAGCTGACACATCTGCTGCTATTATCCCTTATCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAATCTCTAAGCTGACACATCTGCTGCTATTATCCCTTATCCAG  750

seq1  GTCCTTAGAAAAAATTAATTACACTGGTCTTAAAGTTCATCTCTTAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAGAAAAAATTAATTACACTGGTCTTAAAGTTCATCTCTTAATTT  800

seq1  CACTTGCTTTTCCAAATGAATTC  823
      |||||||||||||||||||||||
seq2  CACTTGCTTTTCCAAATGAATTC  823

seq1: chrY_573321_573360
seq2: B6Ng01-151I06.g_530_569

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAT  40
      ||||||||||| |||||||||||||||||||||||||| |
seq2  ATGGAGGAGCTTGAGAAAGTACCCAAGGAGCTAAAGGGCT  40