BAC Information

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BAC

Clone NameB6Ng01-151J15
ChromosomeY (Build37)12 (Build37)
Map Location 1,870,346 - 1,870,44468,218,359 - 68,219,499
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151J15.bB6Ng01-151J15.g
ACCDH947380DH947381
length5001,116
definitionDH947380|Mus musculus domesticus DNA, BAC clone: B6Ng01-151J15, 5' end.DH947381|Mus musculus domesticus DNA, BAC clone: B6Ng01-151J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,444)(68,218,359 - 68,219,499)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatctgatt
ttctgaagtccaccttcttgagttctttacatgaaactcaaggagaatga
agactgaagtgtggacactatgcccctccttagatttgggaacaaaacac
ccatggaaggagttacagagacggagtttggagctgagatgaaaggatgg
accatgtagagactgccatagccagggatccaccccataatcagcatcca
aacgctgacaccattgcatacactagcaagattttattgaaaggacgcag
atgtagctgtctcttgtgagactatgccggggcccagcaaacacagaagt
ggatgctcacagtcagctaatggatggatcatagggctcccaatggagga
gctagagaaagtagccaaggagctaaagggatctgcaaccctataggtgg
aacaacattatgagctaaccagtaccccggagctcttgactctagctgca

gaattcacttatccaaaacctctggttatgtaagaacagacttcttaggg
aaatgaatcagaggcaagggacatctccgggtcaaacaggtaaaaatgta
gcaggcccctcccagcaaaatgtaaccccgtgccttcccaaaaaatttat
ggtgccagcatctcccaaggcaagcctcccttgactattcttcactgaca
aaggcctcatcattgcagtctctggtgtgcttgggataggctcagaagtt
ggacatgatctggattctagacaaagacaaatgtttcccgatgtaaacgc
tgaagggtcacaagcctttgtacttcaacagatgttgttttgatacagtg
gtaaacctttctctcccatttaaattggtccctctcattttagatagttt
taaaaaatttgctgaaaatttcaaacataagtactatatatatacatttc
actctaccttctgcctcaaacaactcccatgttccccctgactctccttc
aaattcatgatctcgtcttcctcaattattgttttatacaacaggcatag
atagaaacatacatacacatatgtataaatgaatacagtttgctgagtct
gtttgctgttggtcagatctgcatgtgtttagtgctgaccactgcaaatt
agaaaaactatcagggaacaggtccttagagaagaatgactatctttcag
cagctatgatcattgtagggttttcattatgtaaatgttcctgtctcaat
ttgcacagattttataaaacaaacaaacaaacaaacctaatgacaatacc
aagtaattttaataccatgaatgtctgggtaaatatcttttaaattattt
tacccaaaaatattttttcaaattcttattcattaattccttatgtagta
aatgattaaattcccataaaacatcaatggatttcatttaaattctcata
caacatatatatgtatttaaactatgtttattgatttagaaaatgacaca
gagttatggatttagctgcccctttacactcctatagaagtatttatagt
agatgatagaaagttttgtattagatttcctagaaaattctttgttaaat
ttatttgtttaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870444
seq2: B6Ng01-151J15.b_447_545

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCA  99
      |||||||||||| ||||||| |||||| |||||||||||||| ||||||
seq2  ACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCA  99

seq1: chr12_68218359_68219499
seq2: B6Ng01-151J15.g_66_1181 (reverse)

seq1  GAATTTATAACAAAATAAATATTTTAACAAAGATATTTTCTAGGAAATCC  50
      ||||||| ||| |||||||   ||||||||||| |||||||||||||| |
seq2  GAATTTA-AAC-AAATAAA---TTTAACAAAGA-ATTTTCTAGGAAAT-C  43

seq1  TAATTACAAAACTTTCTATCATTCCTACTTATAGATACTTTCCTTATAAG  100
      ||| ||||||||||||||||||  |||| |||| ||||||    ||| ||
seq2  TAA-TACAAAACTTTCTATCAT--CTAC-TATAAATACTT---CTAT-AG  85

seq1  GAGTGTAAAGGGGGCAGCTAAAATCCATAAACTCTGTGTCATTTTCCTTA  150
      ||||||||| ||||||||| |||||||| |||||||||||||||||  ||
seq2  GAGTGTAAA-GGGGCAGCT-AAATCCAT-AACTCTGTGTCATTTTC--TA  130

seq1  CAATCAATAAACATAGTTTAAATACATATATATTGTTTTGTATGAGAATT  200
       |||||||||||||||||||||||||||||||   | |||||||||||||
seq2  -AATCAATAAACATAGTTTAAATACATATATA---TGTTGTATGAGAATT  176

seq1  TAAATGAAATCCATTGATGTTTTATGGGAATTTAAATCATTTACTACATA  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAATGAAATCCATTGATGTTTTATGGGAATTT-AATCATTTACTACATA  225

seq1  AGGAATTAATGAATAAGAATTTGAAAAAATATTTTTGGGTAAAATAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTAATGAATAAGAATTTGAAAAAATATTTTTGGGTAAAATAATTT  275

seq1  AAAAGATATTTACCCAGACATTCATGGTATTAAAATTACTTGGTATTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATTTACCCAGACATTCATGGTATTAAAATTACTTGGTATTGTC  325

seq1  ATTAGGTTTGTTTGTTTGTTTGTTTTATAAAATCTGTGCAAATTGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTTGTTTGTTTGTTTGTTTTATAAAATCTGTGCAAATTGAGACA  375

seq1  GGAACATTTACATAATGAAAACCCTACAATGATCATAGCTGCTGAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTTACATAATGAAAACCCTACAATGATCATAGCTGCTGAAAGAT  425

seq1  AGTCATTCTTCTCTAAGGACCTGTTCCCTGATAGTTTTTCTAATTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCTTCTCTAAGGACCTGTTCCCTGATAGTTTTTCTAATTTGCAG  475

seq1  TGGTCAGCACTAAACACATGCAGATCTGACCAACAGCAAACAGACTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGCACTAAACACATGCAGATCTGACCAACAGCAAACAGACTCAGC  525

seq1  AAACTGTATTCATTTATACATATGTGTATGTATGTTTCTATCTATGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTATTCATTTATACATATGTGTATGTATGTTTCTATCTATGCCTG  575

seq1  TTGTATAAAACAATAATTGAGGAAGACGAGATCATGAATTTGAAGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAAACAATAATTGAGGAAGACGAGATCATGAATTTGAAGGAGAG  625

seq1  TCAGGGGGAACATGGGAGTTGTTTGAGGCAGAAGGTAGAGTGAAATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGGAACATGGGAGTTGTTTGAGGCAGAAGGTAGAGTGAAATGTAT  675

seq1  ATATATAGTACTTATGTTTGAAATTTTCAGCAAATTTTTTAAAACTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGTACTTATGTTTGAAATTTTCAGCAAATTTTTTAAAACTATCT  725

seq1  AAAATGAGAGGGACCAATTTAAATGGGAGAGAAAGGTTTACCACTGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGAGGGACCAATTTAAATGGGAGAGAAAGGTTTACCACTGTATC  775

seq1  AAAACAACATCTGTTGAAGTACAAAGGCTTGTGACCCTTCAGCGTTTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACATCTGTTGAAGTACAAAGGCTTGTGACCCTTCAGCGTTTACA  825

seq1  TCGGGAAACATTTGTCTTTGTCTAGAATCCAGATCATGTCCAACTTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAAACATTTGTCTTTGTCTAGAATCCAGATCATGTCCAACTTCTGA  875

seq1  GCCTATCCCAAGCACACCAGAGACTGCAATGATGAGGCCTTTGTCAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCCCAAGCACACCAGAGACTGCAATGATGAGGCCTTTGTCAGTGA  925

seq1  AGAATAGTCAAGGGAGGCTTGCCTTGGGAGATGCTGGCACCATAAATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTCAAGGGAGGCTTGCCTTGGGAGATGCTGGCACCATAAATTTT  975

seq1  TTGGGAAGGCACGGGGTTACATTTTGCTGGGAGGGGCCTGCTACATTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGGCACGGGGTTACATTTTGCTGGGAGGGGCCTGCTACATTTTT  1025

seq1  ACCTGTTTGACCCGGAGATGTCCCTTGCCTCTGATTCATTTCCCTAAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTGACCCGGAGATGTCCCTTGCCTCTGATTCATTTCCCTAAGAA  1075

seq1  GTCTGTTCTTACATAACCAGAGGTTTTGGATAAGTGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCTTACATAACCAGAGGTTTTGGATAAGTGAATTC  1116