BAC Information

Click to search

BAC

Clone NameB6Ng01-152G04
Chromosome19 (Build37)Y (Build37)
Map Location 39,878,215 - 39,879,3021,120,587 - 1,120,820
singlet/doubletsingletsinglet
Overlap geneCyp2c40
Upstream geneNoc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik
Downstream geneLOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152G04.bB6Ng01-152G04.g
ACCDH947971DH947972
length1,071982
definitionDH947971|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G04, 5' end.DH947972|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,878,215 - 39,879,302)(1,120,587 - 1,120,820)
sequence
gaattcaacgtatcttgaaggagatatatcatgcagacctttgagggaca
caagtcttcatcaggtgatcagaaaaggtgtctaagaaacatgtcgtaaa
aatcatatcaaagagatctatgttaaatttgaattttctataaaatattt
agtataagaaaaggaacaagtttatgggagtgagaaattgattgtgacaa
tatttaagtggtatattctaagggtgtcagtgtaccaaagggagaatgta
tggaatttagcaacaaatgaagacagtgatattgatgcaatttttgaaaa
gatagatgcaacttagcttagtagtgtaatactgaaaacttttctccatt
ctcaactagaagtgcaacacttatgtgcaaagcctgaagtgtcttaatat
gctacacctaatacaaaaaattctattagtatgagtggtccatgaataag
catagagacttcctggaagtccacacatacactggtgtttggatgtttat
tgcatgtttcttttggaacactcatgggggacacattttggtcacattta
tatggttataaaaataaagatgttattgtagtcattctttaaaccttggt
tttgaataatatatgttgaagtaattggctaaattttaggatgttatgcc
atttaaattaaggtccttaaatgaagcagtgaacatgttaattagtgaga
atgaaaactaagtcaggtttaatgtcagcaagatcaccattcttcagcat
gtaagtacctagcagttaagtatattcataattaaattacttgttacaat
ttcataagtaccttatcatgttaacaagggcaaatgtatgtgtttatttt
taaagaattttacaattgtttccaatcttcagctcaccctgtgatcccca
attcatcatagatgtgctccctgcatgtcatctgctccattgttttccag
aatcgtttcgattataaggatagattttctagcttgatagaagtgatgat
gcactgaaattttgagctcctctgggtgtcagtaagccaagttttctaat
ttctgaaaccatgtacatctt
gaattctttgtttagctctgtaccccattatattttttttccatttttat
taggtatttagctcatttacatttccaatgctataccaaaagtcccccat
acccactcacccccactcccctacccacccactccccctttttggccctg
gcgttcccctgtactggggcatataaagtttgcaactccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatacatacgcagctaga
gtcaagagctccgggtataccccattttaaatagggttatttgattatcc
ggagtccatcttcaggagttctttatatacattggatattactccctgtt
cagatttcagattggtaaacatactttcccactctgacagtggtcttctt
atcttattgacagtgtcttttgccttacaagagctttgcaattttatgag
gtcccaaatctcgatcttacagtacaagccactactattctgttcaggaa
tttttcccctgtgcccatatcttcaaggcttttctccactttcttctcta
aaatttttagtgactctgcttttatgtggagttcattgatccatgtagac
ttcaccctgcatccctggaatgaagcttacttgatcatgatggatgatta
tttttgatatgttcttgcattcagttagcaagaattttattgagtaattt
ttgtatcaataatcataagggaaattggtctgaagttcttttctttttgt
tgggtatctgtgtgattttgggtatcagagttattgtggcttctaaacat
tgaatttggtagagtaccatctgtttctattttgtgggaaaagttttggg
gagagcttggaattatgtcttctttgaggactgatagaattctgcactaa
acccatctggtcgttggcttgattttgggttgggagactattactgattg
cttctaattcctttaggggatatcggactggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39878215_39879302
seq2: B6Ng01-152G04.b_43_1113 (reverse)

seq1  AAGATGTTACATGTGTTTTCAGAAA-TAGAAAAACCTTGGCTTTACCTGA  49
      |||||| ||||  || ||||||||| |||||||  ||||||||   ||||
seq2  AAGATG-TACA--TGGTTTCAGAAATTAGAAAA--CTTGGCTT--ACTGA  43

seq1  CACCCAGGAGAGCTCAAAATTTCAGTGCATTCATTCACTTTTCCTATCAA  99
      |||||||  |||||||||||||||||||| ||| ||||||   |||||||
seq2  CACCCAGAGGAGCTCAAAATTTCAGTGCA-TCA-TCACTT---CTATCAA  88

seq1  GCTAAGAAAATCCTTATCCTTATAATCGAAACGATTCTGGAAAACAATGG  149
      ||| ||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GCT-AGAAAATC--TATCCTTATAATCGAAACGATTCTGGAAAACAATGG  135

seq1  AGCAGATGACATTGCAGGGAGCACATCCTATGATGAATTGGGGATCACAG  199
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  AGCAGATGACA-TGCAGGGAGCACAT-CTATGATGAATTGGGGATCACAG  183

seq1  GGTGAGCCTGAAGATTGGAAACAATTGTAAAATTCTTTAAAAATAAACAC  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAG-CTGAAGATTGGAAACAATTGTAAAATTCTTTAAAAATAAACAC  232

seq1  ATACATTTGCCCTTGTTAACATGATAAGGTACTTATGAAATTGTAACAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTGCCCTTGTTAACATGATAAGGTACTTATGAAATTGTAACAAG  282

seq1  TAATTTAATTATGAATATACTTAACTGCTAGGTACTTACATGCTGAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATTATGAATATACTTAACTGCTAGGTACTTACATGCTGAAGAA  332

seq1  TGGTGATCTTGCTGACATTAAACCTGACTTAGTTTTCATTCTCACTAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCTTGCTGACATTAAACCTGACTTAGTTTTCATTCTCACTAATT  382

seq1  AACATGTTCACTGCTTCATTTAAGGACCTTAATTTAAATGGCATAACATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTCACTGCTTCATTTAAGGACCTTAATTTAAATGGCATAACATC  432

seq1  CTAAAATTTAGCCAATTACTTCAACATATATTATTCAAAACCAAGGTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTAGCCAATTACTTCAACATATATTATTCAAAACCAAGGTTTA  482

seq1  AAGAATGACTACAATAACATCTTTATTTTTATAACCATATAAATGTGACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGACTACAATAACATCTTTATTTTTATAACCATATAAATGTGACC  532

seq1  AAAATGTGTCCCCCATGAGTGTTCCAAAAGAAACATGCAATAAACATCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGTCCCCCATGAGTGTTCCAAAAGAAACATGCAATAAACATCCA  582

seq1  AACACCAGTGTATGTGTGGACTTCCAGGAAGTCTCTATGCTTATTCATGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGTGTATGTGTGGACTTCCAGGAAGTCTCTATGCTTATTCATGG  632

seq1  ACCACTCATACTAATAGAATTTTTTGTATTAGGTGTAGCATATTAAGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCATACTAATAGAATTTTTTGTATTAGGTGTAGCATATTAAGACA  682

seq1  CTTCAGGCTTTGCACATAAGTGTTGCACTTCTAGTTGAGAATGGAGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCTTTGCACATAAGTGTTGCACTTCTAGTTGAGAATGGAGAAAA  732

seq1  GTTTTCAGTATTACACTACTAAGCTAAGTTGCATCTATCTTTTCAAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGTATTACACTACTAAGCTAAGTTGCATCTATCTTTTCAAAAAT  782

seq1  TGCATCAATATCACTGTCTTCATTTGTTGCTAAATTCCATACATTCTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAATATCACTGTCTTCATTTGTTGCTAAATTCCATACATTCTCCC  832

seq1  TTTGGTACACTGACACCCTTAGAATATACCACTTAAATATTGTCACAATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACACTGACACCCTTAGAATATACCACTTAAATATTGTCACAATC  882

seq1  AATTTCTCACTCCCATAAACTTGTTCCTTTTCTTATACTAAATATTTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCACTCCCATAAACTTGTTCCTTTTCTTATACTAAATATTTTAT  932

seq1  AGAAAATTCAAATTTAACATAGATCTCTTTGATATGATTTTTACGACATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCAAATTTAACATAGATCTCTTTGATATGATTTTTACGACATG  982

seq1  TTTCTTAGACACCTTTTCTGATCACCTGATGAAGACTTGTGTCCCTCAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGACACCTTTTCTGATCACCTGATGAAGACTTGTGTCCCTCAAA  1032

seq1  GGTCTGCATGATATATCTCCTTCAAGATACGTTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCATGATATATCTCCTTCAAGATACGTTGAATTC  1071

seq1: chrY_1120587_1120820
seq2: B6Ng01-152G04.g_99_331

seq1  TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  50
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTTTTCCA-TTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGC  49

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  100
      |||||||||||||||||||| |||| ||||||||||||||| ||||||||
seq2  TATACCAAAAGTCCCCCATACCCACTCACCCCCACTCCCCTACCCACCCA  99

seq1  CTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTT  150
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  CTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTT  149

seq1  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  199

seq1  TGATATATATGCAGCTAGAGTCAAGAGCTCCGGG  234
      ||||| ||| ||||||||||||||||||||||||
seq2  TGATACATACGCAGCTAGAGTCAAGAGCTCCGGG  233