BAC Information

Click to search

BAC

Clone NameB6Ng01-153E14
ChromosomeY (Build37)5 (Build37)
Map Location 573,370 - 573,49086,514,662 - 86,515,826
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153E14.bB6Ng01-153E14.g
ACCDH948644DH948645
length4941,144
definitionDH948644|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E14, 5' end.DH948645|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,370 - 573,490)(86,514,662 - 86,515,826)
sequence
actcttgcacttgcgcataaggcttgtttgctagttaggcacagtggaag
ccagcgccatcttataatggcgattgctcatggcacagctttccacaaca
gtccatgctgtgacaaatgtgaagcaagaacactcctcaattgcagatgg
aggtgcaaacttcaatagccactatggaaatcaatatggcggttcctcaa
taaattaggaatcaatttaccttaagactccaccagatcactaaaagatg
ctccatcctatcacaaaaaaatactttctcaattatgttcatagtggatt
tattcctattagccagaaactggaaacaacatagatacccctcaaccaaa
gaatgtataaagcaagaatgtgtataggtggagcaacaatatgaactaac
cagtacccccagagctcatgtctctagctgcgtatgtagcagaagatggc
ctagtcggccatcattgggaagagaggcccctcagtattgcaaa
gaattcaaaacacatttctacatggataatggaattcaaaacacatttct
agagaacaacgaaactaacatgaagagcaatatcaacatgtttaaatatg
aatggatggctagaaatggagtgaacccccagcagtgtaaacctgctcac
ctcaaacccacgttctcagaataatgtggggcttttccaagttaacttgt
aggaaaataaggtatctcctggcgatactaaacttcttgggcattacaaa
ggtatgtgagtttagaatgagaaatgagagattagctgtgtgttggtggc
aaatacctggtctacagagcagaacagccagggctacacagagagaccct
gtcttgaaaaaccaaaaaaattaaaagggagaaagagagaaagaaagaaa
gaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaagg
aaggaaggaagaaagaaaaaaattgagagattggttgctacttagctcac
agtaaaaagtatgtttacttttacctaagaccagatcaactatgatctca
gctaggcatgtttggtaacacacctttaatcccagcacctggtcaatctc
tgtgagtttgattactgatctgatgtacagagtgagttctaggacagcca
ggaccacatagagggacggtatggaaagaaaacatacaaaacaaaacaaa
ataacctaaataaaccaaccaaccaaccagttaaccaaccaaccagtcca
cccaacaatcagcccaccaaccagctcatcaaccaaccagttctgcaaac
aaccaagcaaacctctgtgcagttctagttgatataggggcagtactgta
atgcccaagtagactggaatcctcttattgttctgtccatttgtcttgag
aatggatactaagtcactacactccttgtgccaacaggtctctatactaa
gccagtatgctatttggttgcagctttagtttgcctactgattaactggt
tcagttgaagttctcacatgggtcactctacttgggcaatgatagactgc
acgaagtcttggagagatggaagaggtttgaaacagatcagctgccccta
tagcttcggagaaaagacaaggacccggatcaagactatgcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573370_573490
seq2: B6Ng01-153E14.b_425_546

seq1  TATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTC  49
      ||||| |||| |||||||||||| ||||||||| || |||||||||||||
seq2  TATAGGTGGAGCAACAATATGAACTAACCAGTACCCCCAGAGCTCATGTC  50

seq1  TCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAG  99
      ||||||||| |||||| |||||||||||||||| ||||||||||||||||
seq2  TCTAGCTGCGTATGTAGCAGAAGATGGCCTAGTCGGCCATCATTGGGAAG  100

seq1  AGAGGCCCCTTGGTCTTGCAAA  121
      ||||||||||  || |||||||
seq2  AGAGGCCCCTCAGTATTGCAAA  122

seq1: chr5_86514662_86515826
seq2: B6Ng01-153E14.g_69_1212

seq1  GAATTCAAAACACATTTCTACATGGATAATGGAATTCAAAACACATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACACATTTCTACATGGATAATGGAATTCAAAACACATTTCT  50

seq1  AGAGAACAACGAAACTAACATGAAGAGCAATATCAACATGTTTAAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAACGAAACTAACATGAAGAGCAATATCAACATGTTTAAATATG  100

seq1  AATGGATGGCTAGAAATGGAGTGAACCCCCAGCAGTGTAAACCTGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGGCTAGAAATGGAGTGAACCCCCAGCAGTGTAAACCTGCTCAC  150

seq1  CTCAAACCCACGTTCTCAGAATAATGTGGGGCTTTTCCAAGTTAACTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCCACGTTCTCAGAATAATGTGGGGCTTTTCCAAGTTAACTTGT  200

seq1  AGGAAAATAAGGTATCTCCTGGCGATACTAAACTTCTTGGGCATTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAAGGTATCTCCTGGCGATACTAAACTTCTTGGGCATTACAAA  250

seq1  GGTATGTGAGTTTAGAATGAGAAATGAGAGATTAGCTGTGTGTTGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGAGTTTAGAATGAGAAATGAGAGATTAGCTGTGTGTTGGTGGC  300

seq1  AAATACCTGGTCTACAGAGCAGAACAGCCAGGGCTACACAGAGAGACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTGGTCTACAGAGCAGAACAGCCAGGGCTACACAGAGAGACCCT  350

seq1  GTCTTGAAAAACCAAAAAAATTAAAAGGGAGAAAGAGAGAAAGAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAAAACCAAAAAAATTAAAAGGGAGAAAGAGAGAAAGAAAGAAA  400

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGG  450

seq1  AAGGAAGGAAGAAAGAAAAAAATTGAGAGATTGGTTGCTACTTAGCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGAAAGAAAAAAATTGAGAGATTGGTTGCTACTTAGCTCAC  500

seq1  AGTAAAAAGTATGTTTACTTTTACCTAAGACCAGATCAACTATGATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGTATGTTTACTTTTACCTAAGACCAGATCAACTATGATCTCA  550

seq1  GCTAGGCATG-TTGGTAACACACCTTTAATCCCAGCACCTGGTCAATCTC  599
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCATGTTTGGTAACACACCTTTAATCCCAGCACCTGGTCAATCTC  600

seq1  TGTGAGTTTGATTACTGATCTGATGTACAGAGTGAGTTCTAGGACAGCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTGATTACTGATCTGATGTACAGAGTGAGTTCTAGGACAGCCA  650

seq1  GGACCACATAGAGGGACGGTATGGAAAGAAAACATACAAAACAAAACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACATAGAGGGACGGTATGGAAAGAAAACATACAAAACAAAACAAA  700

seq1  ATAACCTAAATAAACCAACCAACCAACCAGTTAACCAACCAACCAGTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTAAATAAACCAACCAACCAACCAGTTAACCAACCAACCAGTCCA  750

seq1  CCAAACAATCAGCCCACCAACCAGCTCATCAACCAACCAGTTCTGCAAAC  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAATCAGCCCACCAACCAGCTCATCAACCAACCAGTTCTGCAAAC  800

seq1  AACCAAGCAAACCTCTGTGCAGGTTCTAGTTGATATAGGGGCAGTACTGT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACCAAGCAAACCTCTGTGCA-GTTCTAGTTGATATAGGGGCAGTACTGT  849

seq1  AATGCCCAAGTTAGACTGGAATCTTCTTATTGTTCTGTCCATTTGTCTTT  899
      |||||||||| |||||||||||| ||||||||||||||||||||||| ||
seq2  AATGCCCAAG-TAGACTGGAATCCTCTTATTGTTCTGTCCATTTGTC-TT  897

seq1  GAGAATGGATACTAAGTCACTACAACTCCTTGTGGCCAACAAGGTCCTCT  949
      ||||||||||||||||||||||| ||||||||| |||||| |||| ||||
seq2  GAGAATGGATACTAAGTCACTAC-ACTCCTTGT-GCCAAC-AGGT-CTCT  943

seq1  ATACTAAAGCCAGTATGCTATTTGGTTGCAGCTTTAGTTTGCCTACTGTT  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||  
seq2  ATACT-AAGCCAGTATGCTATTTGGTTGCAGCTTTAGTTTGCCTACTG-A  991

seq1  TTAACTGGTTTCAGTTGACAGTTCCTCAGCATGTGTCACTTCTACCTGGG  1049
      |||||||| ||||||||| |||| |||| |||| ||||| ||||| ||||
seq2  TTAACTGG-TTCAGTTGA-AGTT-CTCA-CATGGGTCAC-TCTACTTGGG  1036

seq1  CAAGTGATTAGACTGCACGAAGTCTTAGAGAGAGAAAAGAAAAGAAGGAT  1099
      ||| ||| |||||||||||||||||| ||||||   |||      ||| |
seq2  CAA-TGA-TAGACTGCACGAAGTCTTGGAGAGATGGAAG------AGGTT  1078

seq1  TGAGACAGATCAGCTGCCTCTTATGCCTCCGGAG-AAAGAGAAGGAGCCA  1148
      ||| |||||||||||||| | |||  || ||||| ||||| ||||| || 
seq2  TGAAACAGATCAGCTGCC-CCTATAGCTTCGGAGAAAAGACAAGGACCCG  1127

seq1  GTACAAGACTATGCGGA  1165
      |  ||||||||||||||
seq2  GATCAAGACTATGCGGA  1144