BAC Information

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BAC

Clone NameB6Ng01-153O12
ChromosomeY (Build37)17 (Build37)
Map Location 573,368 - 573,45417,522,576 - 17,523,499
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153O12.bB6Ng01-153O12.g
ACCDH949090DH949091
length500979
definitionDH949090|Mus musculus domesticus DNA, BAC clone: B6Ng01-153O12, 5' end.DH949091|Mus musculus domesticus DNA, BAC clone: B6Ng01-153O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,368 - 573,454)(17,522,576 - 17,523,499)
sequence
gaattcttttgtgattgggttacctcactcaggatgatgccctccaggcc
catccatttgcctaggaatttcataaattcattctttttaatagctgagt
agtactccattgtgtaaatgtaccatattttctgtatccattcctctgtt
gaggggcatctggattctttccagcttgttgcacaatatgtactcactga
taagtggatattagcccagaaacttagaatacacaagatataagatacaa
tttgctaaacgcatgaaactcaataagaacgaagaccaaagtgtggacac
tttgccccttcttagaattgggaacaaaacacccatggaaggagttacag
agacaaagtttggagctgagacgaaaggatagaccatctagagactgcca
tatccagaaccctataggtggaacaacaatatgaactaaccaataccccc
ctggagcttgtgtctctagctgcatatgaatcagaagatggcctagtcgg

gaattcttcatgaaacgttttagctatgaaagtgagctctacccaacctt
cagtgatatcaggtctgtcgtatactgcttataatgatagagccgcttca
gtagattatttgcttaattctaaagtgaatgtccagacagtgtatttctg
attatttttgtatatatttgtatattctggtgcgtgtcagaagaaggcat
cagatcccattatagatgtttgtgagccactgtgtggttgctgggaattg
aactgaggacttctggaagagcagccagtgctcttaccattgagctgtct
ctccagaccctacaattgtacttttggatgctgaatttttttcctatttt
gactgctgtatcaaatattcatagcccatttttaagaaatcaagtgtcaa
atcttagtgaaattggtggttttcttttctttttctttttttaagttttt
gtgttttattacgtgtatttctgtatcttcattacggtttcaattgctgt
aataaaacactgtgaccaaaagcagcttaggggagaagcatttatttgac
tcacaggttacagaccatcatccagggaaactaagtcaggaacacaggac
aggtacctgggggcaaggactgaaggggaggaaaccatggaggagctctg
cttcttgacttgctctttcatggcttgctcagtttagtttcttaatcctt
ccagaaggtggcactacccacagtgaactgggctctcccacatgaatcat
gactcaagaaaatgccagcaggcttgtatatcggccaatgtggtggggac
atttttctcagtttgaggttccctcttcccatatgattctagcctgtact
aagttgacaaaacactaagccgcacactgcataagtgcacagaagtgtga
gtgccagcagaggctgggagagactcatttccctgagctggtggttgtga
gccaccaagtagtgctaggaaggaacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573368_573454
seq2: B6Ng01-153O12.b_457_546

seq1  CCTATAGATGGAACAACAATATGAA-TAACCAGTATCCAC--AGAGCTCA  47
      ||||||| ||||||||||||||||| |||||| || || |   |||||  
seq2  CCTATAGGTGGAACAACAATATGAACTAACCAATACCCCCCTGGAGCTTG  50

seq1  TGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGG  87
      |||||||||||||||||| |||||||||||||||||| ||
seq2  TGTCTCTAGCTGCATATGAATCAGAAGATGGCCTAGTCGG  90

seq1: chr17_17522576_17523499
seq2: B6Ng01-153O12.g_70_995

seq1  GAATTCTTCATGAAACGTTTTAGCTATGAAAGTGAGCTCTACCCAACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGAAACGTTTTAGCTATGAAAGTGAGCTCTACCCAACCTT  50

seq1  CAGTGATATCAGGTCTGTCGTATACTGCTTATAATGATAGAGCCGCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATATCAGGTCTGTCGTATACTGCTTATAATGATAGAGCCGCTTCA  100

seq1  GTAGATTATTTGCTTAATTCTAAAGTGAATGTCCAGACAGTGTATTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTATTTGCTTAATTCTAAAGTGAATGTCCAGACAGTGTATTTCTG  150

seq1  ATTATTTTTGTATATATTTGTATATTCTGGTGCGTGTCAGAAGAAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTGTATATATTTGTATATTCTGGTGCGTGTCAGAAGAAGGCAT  200

seq1  CAGATCCCATTATAGATGTTTGTGAGCCACTGTGTGGTTGCTGGGAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCATTATAGATGTTTGTGAGCCACTGTGTGGTTGCTGGGAATTG  250

seq1  AACTGAGGACTTCTGGAAGAGCAGCCAGTGCTCTTACCATTGAGCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGACTTCTGGAAGAGCAGCCAGTGCTCTTACCATTGAGCTGTCT  300

seq1  CTCCAGACCCTACAATTGTACTTTTGGATGCTGAATTTTTTTCCTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACCCTACAATTGTACTTTTGGATGCTGAATTTTTTTCCTATTTT  350

seq1  GACTGCTGTATCAAATATTCATAGCCCATTTTTAAGAAATCAAGTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGTATCAAATATTCATAGCCCATTTTTAAGAAATCAAGTGTCAA  400

seq1  ATCTTAGTGAAATTGGTGGTTTTCTTTTCTTTTTCTTTTTTTAAGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTGAAATTGGTGGTTTTCTTTTCTTTTTCTTTTTTTAAGTTTTT  450

seq1  GTGTTTTATTACGTGTATTTCTGTATCTTCATTACGGTTTCAATTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTATTACGTGTATTTCTGTATCTTCATTACGGTTTCAATTGCTGT  500

seq1  AATAAAACACTGTGACCAAAAGCAGCTTAGGGGAGAAGCATTTATTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACACTGTGACCAAAAGCAGCTTAGGGGAGAAGCATTTATTTGAC  550

seq1  TCACAGGTTACAGACCATCATCCAGGGAAACTAAGTCAGGAACACAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTTACAGACCATCATCCAGGGAAACTAAGTCAGGAACACAGGAC  600

seq1  AGGTACCTGGGGGCAAGGACTGAAGGGGAGGAAACCATGGAGGAGCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCTGGGGGCAAGGACTGAAGGGGAGGAAACCATGGAGGAGCTCTG  650

seq1  CTTCTTGACTTGCTCTTTCATGGCTTGCTCAGTTTAGTTTCTTAATCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGACTTGCTCTTTCATGGCTTGCTCAGTTTAGTTTCTTAATCCTT  700

seq1  CCAGAAGGTGGCACTACCCACAGTGAACTGGGCTCTCCCACATGAATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGTGGCACTACCCACAGTGAACTGGGCTCTCCCACATGAATCAT  750

seq1  GACTCAAGAAAATGCCAGCAGGCTTGTATATCGGCCAATGTGGTGGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGAAAATGCCAGCAGGCTTGTATATCGGCCAATGTGGTGGGGAC  800

seq1  A-TTTTCTCAG-TTGAGGTTCCCTCTTCCCATATGATTCTAGCCTGTACT  848
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCAGTTTGAGGTTCCCTCTTCCCATATGATTCTAGCCTGTACT  850

seq1  AAGTTGACAAAACACTAAGCCGCACACTGCATAAGTGCACAGAAGTGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACAAAACACTAAGCCGCACACTGCATAAGTGCACAGAAGTGTGA  900

seq1  GTGCCAGCAGAGGCTGGGAGAGACTC  924
      ||||||||||||||||||||||||||
seq2  GTGCCAGCAGAGGCTGGGAGAGACTC  926