BAC Information

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BAC

Clone NameB6Ng01-154J20
Chromosome11 (Build37)Y (Build37)
Map Location 90,503,249 - 90,504,416248,280 - 248,388
singlet/doubletsingletsinglet
Overlap geneCox11
Upstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267
Downstream geneTom1l1, LOC638903, EG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J20.bB6Ng01-154J20.g
ACCDH949613DH949614
length1,151108
definitionDH949613|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J20, 5' end.DH949614|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,503,249 - 90,504,416)(248,280 - 248,388)
sequence
gaattctttgtttaactctttaccccatttcttaatagggttatttgatt
ctcgggagtgaaatgtctactttttaaaagtgccttccttccctttgaat
gtaactataacattagaggtttttgtgacagagtctcaatgtgtagccca
gcctggcctaaaactcatggtcctgcctcaacttagcctagcttgctatt
tttcttgatttctccatgcattaacttttgttttaaacaaaagttttatt
cagtcagttttattctggttgtaaacttattgtattacaatttaagattt
aaggtcagttcaacattgatagcccctttaagaaattcaactatggcatt
aaggtctatgtgatttagaggtatagaggcatgtactttgtatggtgctg
actatattttaacttttaataacctggaacaaagtcatgtgtttataatc
gtgattaaaagctgattgaatcccttggtcattaatgttgagtttatagc
agtaccaagtcatgttatatagctttctgacttttactctggtggtatag
atgacagtaaaaaaatgtggagaatcataatcataaaaagtaatttactg
gtttatcagaagtatttctgtccctcaaaaagaaaaaaaaaaaaaaggag
ccgtgtgtggtggcgcgcgcctttaatcccagcacttgggaggcagaggc
aggcagatttctgagttcgaggccagcctggtctacaaagtgagttccag
gacagccagagctatacagagaaaccctgtctcgaaaaaccaaaaaaaaa
aaaaaaaaaaaaaaaacaaaaggtaattttgggggaaggagaaagtactg
aggtctgaaccaagggtcttttatgttctaccactgagctaagcatccca
ctaccaaaaatgtttagatgtggagtcaattatttcaatggtaacaagag
taaccatactccttatatttgattccaatggctgtaaattttactaattt
gcagtctgggaaggatttgaaggagattgcatgtattggagatgaccaca
aaagctttaatatcacaattatgtacaacttcttataatctatgtgcttg
tcaggtaaggtgaacatcacctaaatcatagaattgtaggttagctttgg
a
aaggccagcctggtctacaaagtgagttccaggacagccagagctacaca
gagaaaccctgtctcaaaaaaacaaaaaacaaaaaacaaacaaacaaaca
aacaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_90503249_90504416
seq2: B6Ng01-154J20.b_44_1194

seq1  GAATTCTTTGTTTAACTCTTTACCCCATTTCTTAATAGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAACTCTTTACCCCATTTCTTAATAGGGTTATTTGATT  50

seq1  CTCGGGAGTGAAATGTCTACTTTTTAAAAGTGCCTTCCTTCCCTTTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGTGAAATGTCTACTTTTTAAAAGTGCCTTCCTTCCCTTTGAAT  100

seq1  GTAACTATAACATTAGAGGTTTTTGTGACAGAGTCTCAATGTGTAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATAACATTAGAGGTTTTTGTGACAGAGTCTCAATGTGTAGCCCA  150

seq1  GCCTGGCCTAAAACTCATGGTCCTGCCTCAACTTAGCCTAGCTTGCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCTAAAACTCATGGTCCTGCCTCAACTTAGCCTAGCTTGCTATT  200

seq1  TTTCTTGATTTCTCCATGCATTAACTTTTGTTTTAAACAAAAGTTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATTTCTCCATGCATTAACTTTTGTTTTAAACAAAAGTTTTATT  250

seq1  CAGTCAGTTTTATTCTGGTTGTAAACTTATTGTATTACAATTTAAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTTTTATTCTGGTTGTAAACTTATTGTATTACAATTTAAGATTT  300

seq1  AAGGTCAGTTCAACATTGATAGCCCCTTTAAGAAATTCAACTATGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGTTCAACATTGATAGCCCCTTTAAGAAATTCAACTATGGCATT  350

seq1  AAGGTCTATGTGATTTAGAGGTATAGAGGCATGTACTTTGTATGGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTATGTGATTTAGAGGTATAGAGGCATGTACTTTGTATGGTGCTG  400

seq1  ACTATATTTTAACTTTTAATAACCTGGAACAAAGTCATGTGTTTATAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTTTAACTTTTAATAACCTGGAACAAAGTCATGTGTTTATAATC  450

seq1  GTGATTAAAAGCTGATTGAATCCCTTGGTCATTAATGTTGAGTTTATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAAAAGCTGATTGAATCCCTTGGTCATTAATGTTGAGTTTATAGC  500

seq1  AGTACCAAGTCATGTTATATAGCTTTCTGACTTTTACTCTGGTGGTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAAGTCATGTTATATAGCTTTCTGACTTTTACTCTGGTGGTATAG  550

seq1  ATGACAGTAAAAAAATGTGGAGAATCATAATCATAAAAAGTAATTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTAAAAAAATGTGGAGAATCATAATCATAAAAAGTAATTTACTG  600

seq1  GTTTATCAGAAGTATTTCTGTCCCTCAAAAAGAAAAAAAAAAAAAAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCAGAAGTATTTCTGTCCCTCAAAAAGAAAAAAAAAAAAAAGGAG  650

seq1  CCGTGTGTGGTGGCGCGCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGTGGTGGCGCGCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  700

seq1  AGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  750

seq1  GACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAA  800
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  GACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACC---AAAAAA  797

seq1  AAAAAAAAAAAAAAAAAAAAAAAAGGTAATTTTGGGGGTAGGAGAAAGTA  850
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  AAAAAAAAAAAAAAAAAAACAAAAGGTAATTTTGGGGGAAGGAGAAAGTA  847

seq1  CTGAGGTCTGAACCAAGGGTCTTTTATGTTCTACCACTGAGCTAAGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGAGGTCTGAACCAAGGGTCTTTTATGTTCTACCACTGAGCTAAGCAT-  896

seq1  CCCACTACCAAAAATGTTTAGATGT-GAGTCAATTATTTCAATGGTAACA  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCACTACCAAAAATGTTTAGATGTGGAGTCAATTATTTCAATGGTAACA  946

seq1  GAAGTAACCATACTCC-TATATTGTATCCAAATGCTTGTAAATTTTTACT  998
        |||||||||||||| ||||||  || | ||||  |||||| |||||||
seq2  AGAGTAACCATACTCCTTATATTTGATTCCAATGGCTGTAAA-TTTTACT  995

seq1  AA-TTGCAGTTCTGGAAGGATTTGAAGTGAGATTTGCATGTTAATTGGAG  1047
      || |||||||   |||||||||||||| |||| ||||||||  |||||||
seq2  AATTTGCAGTCTGGGAAGGATTTGAAG-GAGA-TTGCATGT--ATTGGAG  1041

seq1  ATGACACACAAAAGCTTTAATATCACACATTATTAACAAACTCTTATAAA  1097
      ||||| ||||||||||||||||||||| |||||  ||||  |||||| ||
seq2  ATGAC-CACAAAAGCTTTAATATCACA-ATTATGTACAACTTCTTAT-AA  1088

seq1  TCATAGTGCTTGTCCAGTTTAGTGAACATCACCTAATATTCATTAAGAAT  1147
      ||   |||||||||  ||   ||||||||||||||  | ||||  |||| 
seq2  TCTATGTGCTTGTCAGGTAAGGTGAACATCACCTA--AATCAT--AGAA-  1133

seq1  TTTGTAGGTTATAGCTTTGGA  1168
       ||||||||  ||||||||||
seq2  -TTGTAGGT--TAGCTTTGGA  1151

seq1: chrY_248280_248388
seq2: B6Ng01-154J20.g_74_180 (reverse)

seq1  TTTTCTGTTTGTTTGTTTGTTTGTTTGTGCTTGTTTGTTTGTTTCGAGAT  50
       ||| ||||||||||||||||||||| |  || ||||||| ||| |||| 
seq2  -TTTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTTTTGTTT-TTTTGAGAC  48

seq1  AGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  100
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCA  98

seq1  GGCTGGCCT  109
      |||||||||
seq2  GGCTGGCCT  107