BAC Information

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BAC

Clone NameB6Ng01-155P21
Chromosome3 (Build37)Y (Build37)
Map Location 92,140,976 - 92,141,7201,870,355 - 1,870,421
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c
Downstream geneSprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155P21.bB6Ng01-155P21.g
ACCDH950618DH950619
length1,158777
definitionDH950618|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P21, 5' end.DH950619|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,140,976 - 92,141,720)(1,870,355 - 1,870,421)
sequence
gaattctctgtttagttctatacccagttttttgaatgggatgcttggtt
tcttggagggtagcatcttgagttctttatgcattttgaatattagccct
ctttcagatgtggggttagtgaagttttttcccaatctgtagaatgccaa
tttgtcctattgactatttcctttgccttacagaagcttttaagtttcat
aaggtcccatttatcaattcttgatcttagagcctgagccattaggttct
gtttaggaaatcccacccccaagctccatgcccatgagttcaaggctctt
tcccactttctcttctattaaattcagtatatctgattttatgttgaggt
ccttgattcacttggacttgagctttgtccaaggtgacaaatatggatct
attttcatttttctacataccaactgccagttagaccagcaccatttatt
gaagatgctttattttgttcattgtacattcttggcttctttgtcaaaga
ttatgtatctacaggtgtgcaatgttatttccagatcttccattctactc
aattgatcaacctgtctgtctctgtaccaataccagactgtttttatcac
tattgctttgcagtattgtttgaggtcaggaattgtgatttttctccaga
agttcttttatttttaagaattgttttcactatcctgggttttttgtttt
tctacatgaaattgagaattgccctttccatgcctgtgaataattgtgct
gaaatttttgatggggatagcattgaatctgtagattgtttatggtaaga
tgatcaattttattatgctaatcctaccaatccatgaacatgggagatct
ctccattttctgaagtcttcttagatttctttcttgagagacatgaagtt
cttgttatagcatctttaggtgaaaacacaattctgtcatgtagagattt
gacatataaaaacttcattgaatttatgtttgcaccggattgtagcttag
attcctttcagaaaaattttcccttatccttctctcacccatactctttc
ttatggaaaccacatcatccttataaactcatgagatcatcttctaagat
gagaattgagtgaaaccaccgtatatattttctcctcctgttaacttcag
ttaacatg
gaattcatattgaatgactcagcttggagaagagtttttatctagaacag
ctgagttaagcagccagccagagttcaaaaagaaccaggaaggggtgagc
ttattcagtagtgtttctcagaggctaaaactattctaggtctagataag
attctacagagactagaaggtttcaggaataggcttaggttagcaaacag
aaacaatagggccccaagtcaataatctttcagatgaataaaagttatat
ttacaatgtctaaaatagaaactatgaaacactgatagaagaaactgaaa
agaatacaaatacatggaaagattttctatgattgttggttggagacatc
atgttaaaatatctctgaaatacctatcaaaataaaaaaactcctgaaat
gtgtacccaaggagctgaagccctataggtggaacagcaatatgaactaa
ccagtaccctcagagcttgtgtctctagctgcatatgtagcagaagatgg
cctagtcggccatcattgggaggagaggccccttggtattgcaaacttta
tatgccccagtacaggggaggggaacgccagggccaaaaagggggagtgg
atggatagggaagcagggcagggggagggtctaggggactttcagtataa
catttgaaatgtaaatgaagaaaatatctaataaaaatgggaaaaaatga
aatttgtaagaaaccacaagaattaccaaatagtcacatatatctgacca
ctaaactgaaggcatcacagtatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92140976_92141720
seq2: B6Ng01-155P21.b_469_1206

seq1  CAACTGCCAGTTAGACCAGCACCATTTATTGAAGATGCTTTATTTTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCAGTTAGACCAGCACCATTTATTGAAGATGCTTTATTTTGTTC  50

seq1  ATTGTACATTCTTGGCTTCTTTGTCAAAGATTATGTATCTACAGGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACATTCTTGGCTTCTTTGTCAAAGATTATGTATCTACAGGTGTGC  100

seq1  AATGTTATTTCCAGATCTTCCATTCTACTCAATTGATCAACCTGTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTTCCAGATCTTCCATTCTACTCAATTGATCAACCTGTCTGTC  150

seq1  TCTGTACCAATACCAGACTGTTTTTATCACTATTGCTTTGCAGTATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCAATACCAGACTGTTTTTATCACTATTGCTTTGCAGTATTGTT  200

seq1  TGAGGTCAGGAATTGTGATTTTTCTCCAGAAGTTCTTTTATTTTTAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGGAATTGTGATTTTTCTCCAGAAGTTCTTTTATTTTTAAGAA  250

seq1  TTGTTTTCACTATCCTGGGTTTTTTGTTTTTCTACATGAAATTGAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCACTATCCTGGGTTTTTTGTTTTTCTACATGAAATTGAGAATT  300

seq1  GCCCTTTCCATGCCTGTGAATAATTGTGCTGAAATTTTTGATGGGGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCCATGCCTGTGAATAATTGTGCTGAAATTTTTGATGGGGATAG  350

seq1  CATTGAATCTGTAGATTGTTTATGGTAAGATGATCAATTTTATTATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATCTGTAGATTGTTTATGGTAAGATGATCAATTTTATTATGCTA  400

seq1  ATCCTACCAATCCATGAACATGGGAGATCTCTCCATTTTCTGAAGTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACCAATCCATGAACATGGGAGATCTCTCCATTTTCTGAAGTCTTC  450

seq1  TTAGATTTCTTTCTTGAGAGACATGAAGTTCTTGTTATAGCATCTTTTAG  500
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TTAGATTTCTTTCTTGAGAGACATGAAGTTCTTGTTATAGCATCTTT--A  498

seq1  GGTGAAAACACAATTCTGTCATGTAGAGATTTGACAATATAAAAAACTTC  550
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  GGTGAAAACACAATTCTGTCATGTAGAGATTTGAC-ATAT-AAAAACTTC  546

seq1  ATTGAATTTATGTTTGCACC-GATTGTAGCTTAGATCCCTTTCAG-AAAA  598
      |||||||||||||||||||| ||||||||||||||| |||||||| ||||
seq2  ATTGAATTTATGTTTGCACCGGATTGTAGCTTAGATTCCTTTCAGAAAAA  596

seq1  TTTTCCC-TATCCTTCTCTCACCCATACTC-TTCTTATGGAAACCAACAT  646
      ||||||| |||||||||||||||||||||| |||||||||||||| ||||
seq2  TTTTCCCTTATCCTTCTCTCACCCATACTCTTTCTTATGGAAACC-ACAT  645

seq1  CATCC-TATAAACCTCATGAGATCATCTTCTTAAAGATGAAATATGAGTG  695
      ||||| |||||| ||||||||||||||||||  ||||||| |  ||||||
seq2  CATCCTTATAAA-CTCATGAGATCATCTTCT--AAGATGAGAATTGAGTG  692

seq1  AAATCACACTGTATTTATTTTCTTCTTCCTGTATAACTTCAGTTAACATG  745
      |||   ||| |||| ||||||| || |||||| |||||||||||||||||
seq2  AAA--CCACCGTATATATTTTC-TCCTCCTGT-TAACTTCAGTTAACATG  738

seq1: chrY_1870355_1870421
seq2: B6Ng01-155P21.g_469_525

seq1  GTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTA  50
      |||||||||||||| |||          |||||||||||||||| || ||
seq2  GTACCCAAGGAGCTGAAG----------CCCTATAGGTGGAACAGCAATA  40

seq1  TGAACTAACCATTACCC  67
      ||||||||||| |||||
seq2  TGAACTAACCAGTACCC  57