BAC Information

Click to search

BAC

Clone NameB6Ng01-156A23
ChromosomeY (Build37)
Map Location 1,120,586 - 1,121,016
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156A23.bB6Ng01-156A23.g
ACCDH950667DH950668
length1,264962
definitionDH950667|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A23, 5' end.DH950668|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacacaccactctcatcaatggacagatcatggaaacagaaatt
aaacaggacacagtgaaactaaatgaagttatgaaacaaatggatctaac
aggtatctacagaacattttgacctaaattaaaggatatacctacttctc
agcacctcatggtaccttttccaaatttgaccatataattggtcacaaaa
caggcctcaatagttacaaaaatattgatattgtcccatgcatcctatca
gatcaccatggattatagctgatcttcaataacaaaataaaaaatagaaa
accaacattcacttggaaatttaacaacagacttctcaatgatacgtcgg
tcaaggaaggaatgaagaaagaaattaaggactttttagagtttaatgaa
aatgaaggcacaacatacccaaacttatgggacacaatgaaagcatttct
aagaggaaaactcataactctgagaacctcctaaaagaaactagaaagag
cacacactagcagcttgacaaaacacctgaaagctctagaagaaaggaag
caaattcaccaaagaggaatagatggcagaaaataatcaaactcaggggc
aaaattaaccaagtgtaaacaagaagaactattcaaagaatcaaccaaac
gaggagctggttctttagaaaatcaacaagatagataaacccttagccag
actcacgagagggcacaggaacagcatcttaattaacaaaattagaaatg
aaaagggatacataacaacagatcctgaagaaatttaaaacaccatcaga
tccttctacaaaaggctatactcaacaaaactggaaaacctggattaaat
gaaaaagtttctagacagataccaggtaccaaagttaaatcagatcagtt
aatgatctaaacagtcctatatcccctagagaaagaaacactttcattaa
tagtctcccaaccaaaaataagcccaggaccacatgggtttagtgcagaa
atctatcagaccttcaagaagatctaattccagttctttacaaactattc
cacaaaaatagaagcaaaagtactctacccactcattctatgagccacaa
ttactttgacacctaaaccacagaaagacccaccaaagataaagaaactt
cgaccagtttcatttatgaatatcatgccaaatctcaataattcttgcct
acttgaattccagaaccactcaaaacaatactcttattcctgtgaaccac
gatgaggggtcgac
gaattccttgagaaggagcagtggccttatcagaggagttgtgttactga
gggcaaactttgaaatttcttttttttttaattttttattaggtatttag
cttatttacatttccaatgctataccaaaagtcccccatacccacccacc
cccactcccctaccaacccactccccctttttggccctggcgttcccctg
tactggggcatataaattttgcgtgtccaatgggcctctctttccagtga
tggccgactaggccatcttttgatacatatgcaggtagagtcaagagctc
cgggatactggttagttcataatgttgttccacctatagggttgcagatc
cctttagctccttggctactttctctagctcctccattgggagccctgtg
atccatccattagctgactgtgagcatccacttctgtgtttgctaggccc
cggcatagtctcacaagagacagctacatctgggtcctttcgataaaatc
ttgctagtgtatgcaatggtgtcagcgtttggatgctgattatggagtgg
atccctggatatggcagtctctgaaatttctaaagtccattccaactgct
tctctccacctgctgcctgcagaccaggatgtaaaactctcaagtattga
tctagagccatgcttcctgccataatgatcatgttttttatttgaggttt
aaagtcttttttaattttttattagatatttactttatttacatttcaaa
tgttgtcccctttcctaggttcccctctgaaaatcttctatcccctctcc
cctctcccgctgctcaccaacccatccttgcttcctggccctggcattcc
cctacaaagggcatcaagccttcacaggaccaagggcctctcctgcaatc
caactaggccatcctcttctacatatgcaactagagccatgagtcctatc
atgcattttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121016
seq2: B6Ng01-156A23.g_138_567

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
       ||||||||  ||||||||||||||||||| || ||||||||||||||||
seq2  -TTTTTTTTTAATTTTTTATTAGGTATTTAGCTTATTTACATTTCCAATG  49

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||| |||||||||||||||||||| || ||||
seq2  CTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCAACCC  99

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  150
      |||||||||||||||||||||  |||||||||||||||||||||||| ||
seq2  ACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAATTT  149

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  199

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  250
      |||||| |||||||| ||||||||||||||||||| |||||||||| |||
seq2  TTGATACATATGCAGGTAGAGTCAAGAGCTCCGGGATACTGGTTAGTTCA  249

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  300
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTAC  299

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACT  349

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  400
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAG  399

seq1  ACAGCTACATCTGCCTCCTTTCAATAAAATC  431
      |||||||||||||  ||||||| ||||||||
seq2  ACAGCTACATCTGGGTCCTTTCGATAAAATC  430