BAC Information

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BAC

Clone NameB6Ng01-157N05
ChromosomeY (Build37)13 (Build37)
Map Location 1,120,578 - 1,120,80187,560,761 - 87,561,911
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157N05.bB6Ng01-157N05.g
ACCDH951951DH951952
length1,0211,132
definitionDH951951|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N05, 5' end.DH951952|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,578 - 1,120,801)(87,560,761 - 87,561,911)
sequence
gaattccaactctagcaaccaaaataacaggaagcaacaacgatttttcc
ttttcttaatatcaatgaactcaattccccaataaaaagacatcgactaa
cagactggttatataaacaggacccaactttttgctgcatagagcaaacc
cacctcagggacaaagacagacactactttagagtaaaaggctggaaaac
aattttcccagcaaatggtcccaacaaaccagctggagtagccattatta
aataaaatcaactttcttttttaaaaatattttcttattatgtattttcc
tcaattacatttccaatgctatcccaaaagtaccccataccctcctcccc
actttcctacccacccattcccatttattttttattttttattttttggc
cctggtattcccctgtactggggcatataaagtttgcaagtccaatgggc
ctctctttcaagtgatggctgactaggccatcttttgatacatatgcagc
tagagtcaagagctccagggtactggttagttcataacgttgttccacct
atagggttgcagatccctttagctccttgggtactttctctagctcctcc
attgggagtcctgtgatccatccaatagctgatttgagcatcaactttca
acctaaagttctcaaaaaagataaggagggacacttcttactcatcaaat
gtaaaatttaccaagataaactctcaattctgaatatctatgctccaagt
gcagggtcatctacattcattaaagaatctttgctaaaacacaaagtaca
caacacaactcacacaataatagtgggagacttcaaaaccccactctcat
caatggacaaatcctggaaacagaaactaaatgagacagtaaaacttata
gaagttatgaaacaaatggatttaacagataactgtagaacatttcatcc
taaatcaaaaggatatacctttttctcagaacctcaaaatagcttcccca
aaactgaccatataatctgtc
gaattccatccaccaatcagtagcagcagcatgacctagcacaaaccacc
aggtactctttagcaggagcaattaggaatgtccaggtctccatgagaag
ttgtttgctgtgcctctctcaaaaaagtgaaaatcagaaacgttgcaaga
ccaactgagcattgcaaggctagatacatgtgtacagtccatgcccatca
aatcctattcatactctgtccaaaaatcatgtatcctctcatgtgtctct
gcatcaaatgacattacaaataatttccacttcaatatatctctttccta
ataacctgtgacttcaaaatgactctgcttcttttccatgtttgctctct
tgtgaaaagtaagtctctttcactgtactttccttaacttgtcattaact
tgtacttacttatttgcaataactcagacaaaactatgaaatatgtactt
ttgccaaaggcataaattgtggcacttaaagactgtgataaatgtgatct
ttcattaattcaacattcattcatttattcattcattcattcaaagtagt
tgactgcatggttatgacttttgataaactgaatttaaaatttgaaaata
tagagatataaataatactaaatattacttcaaactgagaaaacaactat
aattataagaacctgagcatcatgaaaatccattgtataatactatatat
tttaattttaaacatttgggccttctataaagaataaaagttaattgaat
gtaagttgtgtttcttattcttttaagctgtatttgtttatatgcataca
gtgtagctgttttaaaaatactataaaagggcattggatcctattacaga
tgattataagctattatatgggttgctggaaattgaactcaggaccttgg
aagagaagttagtgctcttaaccactgagtcaattctccagccatctcta
agcagtaaagttaatgaatatagttgtgttcctattgcagctatgtagtt
atgaccaggattgtactctaagcattttcttcaacatgtgagaaaataac
tcattgtgtataactttgggtctgtcaattctaaggatccatactatatg
tgtcattgttacagcgaaacttgtgaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120578_1120801
seq2: B6Ng01-157N05.b_315_548

seq1  TTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACAT  50
      ||||||||   | |||||      |||||| ||||||  |||| ||||||
seq2  TTTTTTAAAAATATTTTC------TTATTATGTATTTTCCTCAATTACAT  44

seq1  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  100
      |||||||||||| |||||||| ||||||| || ||   |||||||  |||
seq2  TTCCAATGCTATCCCAAAAGTACCCCATACCCTCC--TCCCCACTTTCCT  92

seq1  GCCCACCCACTCCC------------------CCTTTTTGGCCCTGGTAT  132
       |||||||| ||||                    ||||||||||||||||
seq2  ACCCACCCATTCCCATTTATTTTTTATTTTTTATTTTTTGGCCCTGGTAT  142

seq1  TCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTT  182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTT  192

seq1  CCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGC  224
      | ||||||||| |||||||||||||||||||| |||||||||
seq2  CAAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGC  234

seq1: chr13_87560761_87561911
seq2: B6Ng01-157N05.g_70_1201

seq1  GAATTCCATCCACCAATCAGTAGCAGCAGCATGACCTAGCACAAACCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCACCAATCAGTAGCAGCAGCATGACCTAGCACAAACCACC  50

seq1  AGGTACTCTTTAGCAGGAGCAATTAGGAATGTCCAGGTCTCCATGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTCTTTAGCAGGAGCAATTAGGAATGTCCAGGTCTCCATGAGAAG  100

seq1  TTGTTTGCTGTGCCTCTCTCAAAAAAGTGAAAATCAGAAACGTTGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTGTGCCTCTCTCAAAAAAGTGAAAATCAGAAACGTTGCAAGA  150

seq1  CCAACTGAGCATTGCAAGGCTAGATACATGTGTACAGTCCATGCCCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGAGCATTGCAAGGCTAGATACATGTGTACAGTCCATGCCCATCA  200

seq1  AATCCTATTCATACTCTGTCCAAAAATCATGTATCCTCTCATGTGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATTCATACTCTGTCCAAAAATCATGTATCCTCTCATGTGTCTCT  250

seq1  GCATCAAATGACATTACAAATAATTTCCACTTCAATATATCTCTTTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAATGACATTACAAATAATTTCCACTTCAATATATCTCTTTCCTA  300

seq1  ATAACCTGTGACTTCAAAATGACTCTGCTTCTTTTCCATGTTTGCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGTGACTTCAAAATGACTCTGCTTCTTTTCCATGTTTGCTCTCT  350

seq1  TGTGAAAAGTAAGTCTCTTTCACTGTACTTACCTTAACTTGTCATTAACT  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGAAAAGTAAGTCTCTTTCACTGTACTTTCCTTAACTTGTCATTAACT  400

seq1  TGTACTTACTTATTTGCAATAACTCAGACAAAACTATGAAATATGTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACTTATTTGCAATAACTCAGACAAAACTATGAAATATGTACTT  450

seq1  TTGCCAAAGGCATAAATTGTGGCACTTAAAGACTGTGATAAATGTGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAGGCATAAATTGTGGCACTTAAAGACTGTGATAAATGTGATCT  500

seq1  TTCATTAATTCAACATTCATTCATTTATTCATTCATTCATTCAAAGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATTCAACATTCATTCATTTATTCATTCATTCATTCAAAGTAGT  550

seq1  TGACTGCATGGTTATGACTTTTGATAAACTGAATTTAAAATTTGAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCATGGTTATGACTTTTGATAAACTGAATTTAAAATTTGAAAATA  600

seq1  TAGAGATATAAATAATACTAAATATTACTTCAAACTGAGAAAACAACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATATAAATAATACTAAATATTACTTCAAACTGAGAAAACAACTAT  650

seq1  AATTATAAGAACCTGAGCATCATGAAAATCCATTGTATAATACTATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAGAACCTGAGCATCATGAAAATCCATTGTATAATACTATATAT  700

seq1  TTTAATTTTAAACATTTGGGCCTTCTATAAAGAATAAAAGTTAATTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTAAACATTTGGGCCTTCTATAAAGAATAAAAGTTAATTGAAT  750

seq1  GTAAGTTGTGTTTCTTATTCTTTTAAGCTGTATTTGTTTATATGCATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGTGTTTCTTATTCTTTTAAGCTGTATTTGTTTATATGCATACA  800

seq1  GTGTAGCTGTTTTCAAAAATACTATAAAAGGGCATTGGATCCTATTACAG  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTGTTTT-AAAAATACTATAAAAGGGCATTGGATCCTATTACAG  849

seq1  ATGATTATAAGCTATTATAT-GGTTGCTGGAAATTGAACTCAGGACCTTG  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGATTATAAGCTATTATATGGGTTGCTGGAAATTGAACTCAGGACCTTG  899

seq1  GAAGAGAAGTTAGTGCTCTTAACCACTGAGTCAATTCTCCAGCCATCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGTTAGTGCTCTTAACCACTGAGTCAATTCTCCAGCCATCTCT  949

seq1  AAGCAGTAAAAGTTAATTGAATATAAGTTGTGTTCCTATGCAAGCTATGT  999
      ||||||| |||||||| ||||||| ||||||||||||||   ||||||||
seq2  AAGCAGT-AAAGTTAA-TGAATAT-AGTTGTGTTCCTATTGCAGCTATGT  996

seq1  AGTTTATGAACCAGGAATTGTACTCTAAGCATTTTCTTCAACATTGTGCA  1049
      || ||||| |||||| ||||||||||||||||||||||||||| |||| |
seq2  AG-TTATG-ACCAGG-ATTGTACTCTAAGCATTTTCTTCAACA-TGTG-A  1041

seq1  GAAAAT-ACTCA-TGTGTATTTACTTTGGGTCTGGTTCAAATCTCTAAGG  1097
      |||||| ||||| |||||| | ||||||||||||  ||||   |||||||
seq2  GAAAATAACTCATTGTGTA-TAACTTTGGGTCTG--TCAA--TTCTAAGG  1086

seq1  ACCCATTAACTAATATTGTGTCATTGTTACAGCAGAGAAACTTGTAGAAA  1147
      | ||||  ||| ||| |||||||||||||||||   ||||||||| ||||
seq2  ATCCAT--ACT-ATA-TGTGTCATTGTTACAGC---GAAACTTGT-GAAA  1128

seq1  AAAA  1151
      ||||
seq2  AAAA  1132