BAC Information

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BAC

Clone NameB6Ng01-157P22
ChromosomeY (Build37)9 (Build37)
Map Location 1,120,566 - 1,120,88320,219,273 - 20,219,841
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157P22.bB6Ng01-157P22.g
ACCDH952073DH952074
length854923
definitionDH952073|Mus musculus domesticus DNA, BAC clone: B6Ng01-157P22, 5' end.DH952074|Mus musculus domesticus DNA, BAC clone: B6Ng01-157P22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,566 - 1,120,883)(20,219,273 - 20,219,841)
sequence
gaattcctctccatttaattatatattagttttaggtttactataaattg
catttatgcttatgtacgtctcttgtactccttattcctctatgaatttc
attttaaagaagagttggattttgtcaaaggctttttagcatctaatgag
atgatcatatactttctttttttttttaaccagggattttttttttcatt
tctttttttttccatattttattaggtatttagctcatttacatttccaa
tgctataccaaaagtcccccatacccacctccccccactcccctacccac
ccactcaccctttttggccctggcgttcccctgtactggggcatataaag
tttgcaagtccaatgggcctctctttgcagtgatggctgactaggccatg
ttttgatacatatgcagctagagacaagagctccggggtactgcttagtt
catattgttgttccacctatagggttgcagttccctttagctccttgggt
aatttctctagctcctccattgggggccgtgtgatccatccaatagctga
ctgtgagcatccacttctgtgtttgctaggtcctggcatagtctcacaag
agaaagctatatctgggtcctttcagcaaaatcttgctagtgtatgcaat
ggtgtcagcgtttggaagctgatcatgggatggatctctggatatggcaa
tcactagatggtccatcctttcatcacacttccaaattttgtctctgtaa
ctccttccatgggtgttttgtttcctattctaagaaggggcaaagatcgc
atactttctttcattcacaatttttgtatggtggattacattgactattt
ctca
gaattctctcttccgtctcttatattctgttgctgatgctcacatctatg
gttcctgatttctttcctagtgtttctatctccagagttgtctccctttg
ggttttctttattgtttcttcttccctttttaggtcttgggtggttttgt
tctattccatcacctggttggttgtgttttcctgtaattctttaagggat
ttttgtgttttctctttaaggacttctatctgtttagcagtgttttcctg
taattctttaaggacttctacctttttagcagtgttctcatatatttctt
taagtgagttattaatgaccttcttaaaatcctctaacagcatcatgaga
tatgattttaaatccaaatcttgcttttcaggtgtgttgggggtatccag
gactggctgaggtgggagtgctgggttctgatgatggtgagtgttcttgg
tttccattagtaagattcttaagtttgccttttgccatctgataatctct
ggcattagttgttatagctttctctagctggagcctgttcctcctgtgtt
tctgtcagcctctgttcacagtcctgtgagtccagctctctcctaagtct
cagtggtcagagcactcactccccgcaggcaaactctcctcttgcaggga
aggtgtagagaagcctagcacccagatctgcctcctggatgaagatgaag
acccgaaacagggtctgtcccagaagatgtgttgcctctgcagtctgcac
actctccagcacagactggtctctgagggacttgggacacaagctgtgat
ttttcttatatgtcaagaagagttcctagaaggtgtgtgtgcatttgttt
tgaaggcacagtttttttttgtgtttttgtttttgtttaaacaatttgtg
tgtgtggtgtgggtgggtgggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120566_1120883
seq2: B6Ng01-157P22.b_210_545

seq1  TCTTTTTT--------------TTTTTTTTTTAA----TTTTTTTTTCCA  32
      ||||||||              |||||||||| |    ||||||||||||
seq2  TCTTTTTTTTTTTAACCAGGGATTTTTTTTTTCATTTCTTTTTTTTTCCA  50

seq1  TTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAG  82
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAG  100

seq1  TCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTT  132
      ||||||||| |||||  ||||||||||||| ||||||||||| |||||||
seq2  TCCCCCATACCCACCTCCCCCCACTCCCCTACCCACCCACTCACCCTTTT  150

seq1  TGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  182
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  200

seq1  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATG  232
      |||||||||||| |||||||||| ||||||||||| |||||||| |||||
seq2  GGGCCTCTCTTTGCAGTGATGGCTGACTAGGCCATGTTTTGATACATATG  250

seq1  CAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCC  282
      ||||||||| ||||||||||||||||||| |||| |||||  ||||||||
seq2  CAGCTAGAGACAAGAGCTCCGGGGTACTGCTTAGTTCATATTGTTGTTCC  300

seq1  ACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCT  318
      ||||||||||||| || ||||||||||||||||| |
seq2  ACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGT  336

seq1: chr9_20219273_20219841
seq2: B6Ng01-157P22.g_423_991 (reverse)

seq1  CACCCACCCACCCACA-CACACACACAAATTGTTTAAACAAAAACAAAAA  49
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGCCCACCCACCCACACCACACACACAAATTGTTTAAACAAAAACAAAAA  50

seq1  CAACAAAAAAAAACTGTGCCTTCAAAACAAATGCACACACACCTTCTAGG  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ACAAAAAAAAACTGTGCCTTCAAAACAAATGCACACACACCTTCTAGG  99

seq1  AACTCTTCTTGACATATAAGAAAAATCACAGCTTGTGTCCCAAGTCCCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTTGACATATAAGAAAAATCACAGCTTGTGTCCCAAGTCCCTC  149

seq1  AGAGACCAGTCTGTGCTGGAGAGTGTGCAGACTGCAGAGGCAACACATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCAGTCTGTGCTGGAGAGTGTGCAGACTGCAGAGGCAACACATCT  199

seq1  TCTGGGACAGACCCTGTTTCGGGTCTTCATCTTCATCCAGGAGGCAGATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACAGACCCTGTTTCGGGTCTTCATCTTCATCCAGGAGGCAGATC  249

seq1  TGGGTGCTAGGCTTCTCTACACCTTCCCTGCAAGAGGAGAGTTTGCCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTAGGCTTCTCTACACCTTCCCTGCAAGAGGAGAGTTTGCCTGC  299

seq1  GGGGAGTGAGTGCTCTGACCACTGAGACTTAGGAGAGAGCTGGACTCACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGAGTGCTCTGACCACTGAGACTTAGGAGAGAGCTGGACTCACA  349

seq1  GGACTGTGAACAGAGGCTGACAGAAACACAGGAGGAACAGGCTCCAGCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGAACAGAGGCTGACAGAAACACAGGAGGAACAGGCTCCAGCTA  399

seq1  GAGAAAGCTATAACAACTAATGCCAGAGATTATCAGATGGCAAAAGGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCTATAACAACTAATGCCAGAGATTATCAGATGGCAAAAGGCAA  449

seq1  ACTTAAGAATCTTACTAATGGAAACCAAGAACACTCACCATCATCAGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGAATCTTACTAATGGAAACCAAGAACACTCACCATCATCAGAAC  499

seq1  CCAGCACTCCCACCTCAGCCAGTCCTGGATACCCCCAACACACCTGAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCCCACCTCAGCCAGTCCTGGATACCCCCAACACACCTGAAAA  549

seq1  GCAAGATTTGGATTTAAAAT  569
      ||||||||||||||||||||
seq2  GCAAGATTTGGATTTAAAAT  569