BAC Information

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BAC

Clone NameB6Ng01-158D13
ChromosomeY (Build37)17 (Build37)
Map Location 573,407 - 573,51457,892,634 - 57,893,118
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158D13.bB6Ng01-158D13.g
ACCDH952234DH952235
length462767
definitionDH952234|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D13, 5' end.DH952235|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,407 - 573,514)(57,892,634 - 57,893,118)
sequence
attttttagctctgtacctcattttttaatctggttatttgaatttctat
agtacagcttcttgagctcttcttatctattggatactagtcccttatta
gatttaggataggtaaaaatccttgcccaatttgttggtggttttttgtc
tttttgacagtatcttttgccttactgaagctttgcaattttatgagatc
ccatttgtcgattcttgatcttacaacagaagccattgatgttctgttca
ggatttttttctcctgttcctatatcttcgaggattttcccaactttctc
ctctataaatttctgtgtcactggttttatgtggatgtcttttaacaata
tgagtaagtagccttagagcttttgtctctagctgcatatgtagcagaag
atggtcggccatcattgggaagagaggcaccttgcaaactttatatgccc
cagtatagggga
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tcgacctcacaccagtcagaatggctaagatcaataattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcttgggc
atttatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagcgagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gattactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaattttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcccctcccttagaattggg
aacaaaacacccatggaggagttacagagcaaattttggagctgagatga
aaggatggaccatgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573407_573514
seq2: B6Ng01-158D13.b_417_513

seq1  AGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCC  50
      ||||||  |||||||||||||||||||| |||||||||     || ||||
seq2  AGAGCTTTTGTCTCTAGCTGCATATGTAGCAGAAGATG-----GTCGGCC  45

seq1  ATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGT  100
      |||||||||||||||||| |      ||||||||||||||||||||||||
seq2  ATCATTGGGAAGAGAGGCAC------CTTGCAAACTTTATATGCCCCAGT  89

seq1  ACAGGGGA  108
      | ||||||
seq2  ATAGGGGA  97

seq1: chr17_57892634_57893118
seq2: B6Ng01-158D13.g_364_848 (reverse)

seq1  CTAGATGGCCCATCCTTTCGTCACAGCTCCAAACTTTGTCTCTGTAACTC  50
      ||| |||| |||||||||| || |||||||||| |||| |||||||||||
seq2  CTACATGGTCCATCCTTTCATCTCAGCTCCAAAATTTG-CTCTGTAACTC  49

seq1  CTTCCATGGGTGTTTTGTTCCCAATTCTAA-GAAGGGGCAAAGTGTCCAC  99
      | |||||||||||||||||||||||||||| | ||||||| |||||||||
seq2  C-TCCATGGGTGTTTTGTTCCCAATTCTAAGGGAGGGGCATAGTGTCCAC  98

seq1  ACTTTGGCCTTCATTTTTCTTGAGTTTCATGCGTTTAGC-AAATTGTATC  148
      ||||  | ||||||| ||||||||||||||| ||||||| |||||||| |
seq2  ACTTCAGTCTTCATTCTTCTTGAGTTTCATGTGTTTAGCAAAATTGTACC  148

seq1  TTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCACTTATCAGTGA  198
      |||||||||||| |||||| ||||  ||||||||||||||||||||||||
seq2  TTATATCTTGGGAATCCTAGGTTT-GGGGCTAATATCCACTTATCAGTGA  197

seq1  GTACATATTGTGTGAGTTCCTTTGTGATTGGGTTACCTCACTCAGGATGA  248
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  GTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGA  247

seq1  TGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATAAATTCATTCTTT  298
      ||| ||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TGCTCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTT  297

seq1  TTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTAT  348
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TTAATAGCTGAGTAGTAATCCATTGTGTAGATGTACCACATTTTCTGTAT  347

seq1  CCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTA  398
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTCGCTATTA  397

seq1  TAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTATCGGTT  448
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  TAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTT  447

seq1  GGGACATCTTCTGGATATATGCCC-AGAGAGGTATTGC  485
      ||| ||||||||||||| |||||| |||||||||||||
seq2  GGGGCATCTTCTGGATAAATGCCCAAGAGAGGTATTGC  485