BAC Information

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BAC

Clone NameB6Ng01-159G15
ChromosomeY (Build37)11 (Build37)
Map Location 1,870,346 - 1,870,57143,770,817 - 43,771,859
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159G15.bB6Ng01-159G15.g
ACCDH953085DH953086
length4361,017
definitionDH953085|Mus musculus domesticus DNA, BAC clone: B6Ng01-159G15, 5' end.DH953086|Mus musculus domesticus DNA, BAC clone: B6Ng01-159G15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,571)(43,770,817 - 43,771,859)
sequence
ctgatctttccaagactagagactgccatatccagggatccatcccataa
tcagcctccaaacgctgacaccatcgcatacactagcaagattttgctga
aaggaccctgatatagctgtcccttgtgagactatgccggggcctaacaa
acacataagtggatgctcacagtcagctactggatggatcacagggcccc
caatggaggagctagagaaagtacccaaggagctaaagggatctgcaacc
ctataggtggagcaacattatgaactaaccagtaccccggagctcttgac
tctagctgcatatgtatcaaaagatggcctagtcggccatcactgcaaag
agaggcccattggacttgcaaactttatatgccccagtacaggggaacgc
cagggccaaaaagtgggagtggtgggtaggggagtg
gaattccagaaagctcaagctggacgggagatcacccacctgactctgct
cagtaagaaaagagtctgccgctgtaacaacactcagcaggaagaagcac
aggaggcccacgtggggctgctgacccaagtcaatgctgcttctgttagt
cttagtcccttggtcccagtaactcttctcatgccgtcccatgccatgtt
ttcatctgtaaattgcagttcacaactactgtgcagtctgactatgcaag
tggaatgtgattctatggcttgatttcacacacaccacaagggcacaacc
tcccctccactagctccttccttctcagagtttgatctgtcgttgatacc
cggacacgccccatggggacaaattgctctgtgcttggatgtaattggat
tttggaaccaaatggggaacctggaattcctatagggatgagcaggaaag
ggaagaaaatgtgcattgtcacaggtaggaggcacaggccatgcacccgg
ggtctaaaagagcagccactgctctctaccttagcctgtctagaccatac
ctgttttttcatggaagccaggatatacttttaaaaataaacaactcttt
tgaatattaaacacaggcaaaagttgaaagtactctctggtcaaaaatca
aacctcaaacaaaacccttgctattttatatagagatatgaagccaccta
cataactttcctaatgatttgagatgagtcctttctcagtatctgcatgc
agatggagatgtgggggacatatgggaaccaaagtagcatgaggtgactg
agttggggtgctcactgtcatggttgagccaaactagcatacaagggatt
ggcacaatcaagtctttgcaggtacttccttgactgtgacccttgctaga
gctgggagtagcagggagtgaggaggccatcaatcttgcaatccaggtgg
gagaagaacccgaggtcagtttggccaggagacacctcgaaacaacaagg
ggtgatctgttctgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870571
seq2: B6Ng01-159G15.b_264_488

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
       ||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  GCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTG  226
      || || ||| ||||||||||||||||
seq2  AGTGGGAGT-GGTGGGTAGGGGAGTG  225

seq1: chr11_43770817_43771859
seq2: B6Ng01-159G15.g_67_1083

seq1  GAATTCCAGAAAGCTCAAGCTGGACGGGAGATCACCCACCTGACTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGCTCAAGCTGGACGGGAGATCACCCACCTGACTCTGCT  50

seq1  CAGTAAGAAAAGAGTCTGCCGCTGTAACAACACTCAGCAGGAAGAAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAAAAGAGTCTGCCGCTGTAACAACACTCAGCAGGAAGAAGCAC  100

seq1  AGGAGGCCCACGTGGGGCTGCTGACCCAAGTCAATGCTGCTTCTGTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCCACGTGGGGCTGCTGACCCAAGTCAATGCTGCTTCTGTTAGT  150

seq1  CTTAGTCCCTTGGTCCCAGTAACTCTTCTCATGCCGTCCCATGCCATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCCCTTGGTCCCAGTAACTCTTCTCATGCCGTCCCATGCCATGTT  200

seq1  TTCATCTGTAAATTGCAGTTCACAACTACTGTGCAGTCTGACTATGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGTAAATTGCAGTTCACAACTACTGTGCAGTCTGACTATGCAAG  250

seq1  TGGAATGTGATTCTATGGCTTGATTTCACACACACCACAAGGGCACAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTGATTCTATGGCTTGATTTCACACACACCACAAGGGCACAACC  300

seq1  TCCCCTCCACTAGCTCCTTCCTTCTCAGAGTTTGATCTGTCGTTGATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCACTAGCTCCTTCCTTCTCAGAGTTTGATCTGTCGTTGATACC  350

seq1  CGGACACGCCCCATGGGGACAAATTGCTCTGTGCTTGGATGTAATTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACACGCCCCATGGGGACAAATTGCTCTGTGCTTGGATGTAATTGGAT  400

seq1  TTTGGAACCAAATGGGGAACCTGGAATTCCTATAGGGATGAGCAGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACCAAATGGGGAACCTGGAATTCCTATAGGGATGAGCAGGAAAG  450

seq1  GGAAGAAAATGTGCATTGTCACAGGTAGGAGGCACAGGCCATGCACCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAATGTGCATTGTCACAGGTAGGAGGCACAGGCCATGCACCCGG  500

seq1  GGTCTAAAAGAGCAGCCACTGCTCTCTACCTTAGCCTGTCTAGACCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAAAGAGCAGCCACTGCTCTCTACCTTAGCCTGTCTAGACCATAC  550

seq1  CTGTTTTTTCATGGAAGCCAGGATATACTTTTAAAAATAAACAACTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTTCATGGAAGCCAGGATATACTTTTAAAAATAAACAACTCTTT  600

seq1  TGAATATTAAACACAGGCAAAAGTTGAAAGTACTCTCTGGTCAAAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAAACACAGGCAAAAGTTGAAAGTACTCTCTGGTCAAAAATCA  650

seq1  AACCTCAAACAAAACCCTTGCTATTTTATATAGAGATATGAAGCCACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAACAAAACCCTTGCTATTTTATATAGAGATATGAAGCCACCTA  700

seq1  CATAACTTTCCTAATGATTTGAGATGAGTCCTTTCTCAGGTATCTGCATG  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATAACTTTCCTAATGATTTGAGATGAGTCCTTTCTCA-GTATCTGCATG  749

seq1  CAGATGGAGATGTGGGGGACATATGGGAACCAAAGGTAGCATGAGGTGAC  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGATGGAGATGTGGGGGACATATGGGAACCAAA-GTAGCATGAGGTGAC  798

seq1  TGAGTTGGGGTGCTCACTGTCATGGTTGAGCCCAACCTAGCATAACAAGG  850
      |||||||||||||||||||||||||||||| |||| ||||||| ||||||
seq2  TGAGTTGGGGTGCTCACTGTCATGGTTGAG-CCAAACTAGCAT-ACAAGG  846

seq1  GGATTTGGCACCAGTCAAGTCTTTGCAAGGTACTTCCCTGGACTGTGACC  900
      |   |||||| || |||||||||||| |||||||| ||| ||||||||||
seq2  G--ATTGGCA-CAATCAAGTCTTTGC-AGGTACTT-CCTTGACTGTGACC  891

seq1  CTTGCCTAGAGTCTGGGAGTAGGCAGGGAGTGAGAAGGCCATCAAATCTG  950
      |||| |||||| ||||||||| |||||||||||| |||||||| ||||| 
seq2  CTTG-CTAGAG-CTGGGAGTA-GCAGGGAGTGAGGAGGCCATC-AATCTT  937

seq1  CAAATCAAGGTTGGGAGAAGAACCCAGAAGGTACAGGTAGTGACAGGA-A  999
        |||| ||| ||||||||||||||   |||| ||| | | | ||||| |
seq2  GCAATCCAGG-TGGGAGAAGAACCC--GAGGT-CAGTTTG-GCCAGGAGA  982

seq1  GACCACTGAAGAACAGATCAAGGTGGTGTGATTCTGTTCTGACT  1043
       ||| |  || ||||         || |||| ||||||||||||
seq2  CACCTCGAAACAACA--------AGGGGTGA-TCTGTTCTGACT  1017