BAC Information

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BAC

Clone NameB6Ng01-159K10
Chromosome4 (Build37)Y (Build37)
Map Location 18,397,966 - 18,398,8711,120,573 - 1,120,771
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159K10.bB6Ng01-159K10.g
ACCDH953255DH953256
length1,082626
definitionDH953255|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K10, 5' end.DH953256|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,397,966 - 18,398,871)(1,120,573 - 1,120,771)
sequence
gaattctatccaactatctgagactagtgaggtcacacatcgtagaggat
agcctatcatatccactttactataattctaaacagtactctaaaacgtg
cttgtaccacagatacagatagctctcgcctctcattaaataagcttctt
ttctcagctttcctctttcattacagaattcttcaactagtcataatgct
gaacctaactgattatggggaatccagtccaaacaaatacaactacaaga
caacttcttcatataaaggccaagggcattatagaaaagtgggtaggaat
agtgtaaaagacagaagagctggaagtctgctgcaagtttatattgccta
gaactataaactttgcctgagaggaagtctaaacctatgatattgcatcg
ctatgtagctgcctataaaagatctgagaaatgagaataccagtatacgt
gctaacataaaattagaaaaatccaagggttttcaggtttagacaaagga
tgataggcaactaatgggagttgagataaggagaattagacttttctcag
gaatgaaatagttatctatccaaatcaaagtgattgactctgacatcttg
tacacttaaacaacactaaatgaactcagcaagtatatatatatgtatac
ataaatatatatggtggaatgatataattatattttaattgcaatttaga
aaattaataatcaattttacctgagaaaattctgagaaaatatctttgtt
ttgtttctttttatagtgtttttctttcctccattatttttctttttgga
ttttggtttttaagaggatgttgtactctactcaccaaatgaaaaaaatt
gttaaaataaaaataatggtctttcaatgaattcacaatgcaaacatatt
tgttcacatgtatctatatgtatatatatgtacatatatacatatatata
catatgtatatatgaatatataatgacaaattcagatttttttatttaaa
gttagtttcttgaccttatattagtaatctctctgtgagcagaaggctag
tgctggtgggatggaaactgttttgcagagtt
gaattcttttttataaggacttaactaacctgaaatataaaccatatgaa
gacttccaaaataaagaaaattggataccaattttccttatgaacataga
tgcaaattttcttaattaaatacagaatatgaacacatcaaaaggagcaa
ccatccttaagtagacctcactttagagaaaaagactgattcaacattaa
taaatccataaatgtaacccaccaaataagcatactaaaagacaaaaact
gcatgatcatcttattttttttttttttttttttttttttgttggtacat
gtatttttttttttttttttttcccattttttattaggtatttagctcat
ttacatttccaatgctataccaaaagtcccccttacccatccacccccac
tcccctacccacccactccccccctttggccctggcgttcccctgtaccg
gggcacacaaagtctgcgtgtccaatgggcctctctttccagtgatgggc
gactaggccatcttttgatacatatgcagctaaagtcaagagctcagggg
tactggttagttcataatggtgttccacctataggggtgaagatcccttt
aactccttgggtactttctctagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18397966_18398871
seq2: B6Ng01-159K10.b_243_1129

seq1  ATGCTGAACCTAACTGATTATGGGGAATCCAGTCCAAACAAATACAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAACCTAACTGATTATGGGGAATCCAGTCCAAACAAATACAACTA  50

seq1  CAAGACAACTTCTTCATATAAAGGCCAAGGGCATTATAGAAAAGTGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAACTTCTTCATATAAAGGCCAAGGGCATTATAGAAAAGTGGGTA  100

seq1  GGAATAGTGTAAAAGACAGAAGAGCTGGAAGTCTGCTGCAAGTTTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTGTAAAAGACAGAAGAGCTGGAAGTCTGCTGCAAGTTTATATT  150

seq1  GCCTAGAACTATAAACTTTGCCTGAGAGGAAGTCTAAACCTATGATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAACTATAAACTTTGCCTGAGAGGAAGTCTAAACCTATGATATTG  200

seq1  CATCGCTATGTAGCTGCCTATAAAAGATCTGAGAAATGAGAATACCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTATGTAGCTGCCTATAAAAGATCTGAGAAATGAGAATACCAGTA  250

seq1  TACGTGCTAACATAAAATTAGAAAAATCCAAGGGTTTTCAGGTTTAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGCTAACATAAAATTAGAAAAATCCAAGGGTTTTCAGGTTTAGACA  300

seq1  AAGGATGATAGGCAACTAATGGGAGTTGAGATAAGGAGAATTAGACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGATAGGCAACTAATGGGAGTTGAGATAAGGAGAATTAGACTTTT  350

seq1  CTCAGGAATGAAATAGTTATCTATCCAAATCAAAGTGATTGACTCTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAATGAAATAGTTATCTATCCAAATCAAAGTGATTGACTCTGACA  400

seq1  TCTTGTACACTTAAACAACACTAAATGAACTCAGCAAGTATATATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTACACTTAAACAACACTAAATGAACTCAGCAAGTATATATATATG  450

seq1  TATACATAAATATATATGGTGGAATGATATAATTATATTTTAATTGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAAATATATATGGTGGAATGATATAATTATATTTTAATTGCAAT  500

seq1  TTAGAAAATTAATAATCAATTTTACCTGAGAAAATTCTGAGAAAATATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATTAATAATCAATTTTACCTGAGAAAATTCTGAGAAAATATCT  550

seq1  TTGTTTTGTTTCTTTTTATAGTGTTTTTCTTTCCTCCATTATTTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTCTTTTTATAGTGTTTTTCTTTCCTCCATTATTTTTCTTT  600

seq1  TTGGATTTTGGTTTTTAAGAGGATGTTGTACTCTACTCACCAAATGAAAA  650
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGGATTTTGGTTTTTAAGAGGATGTTGTACTCTACTCACCAAATG-AAA  649

seq1  AAAATTGTTAAAAATAAAAATAATGGTC-TTCAATGAATTCACAATGCAA  699
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  AAAATTGTT-AAAATAAAAATAATGGTCTTTCAATGAATTCACAATGCAA  698

seq1  ACATATTTGTTCACATGTATCTATATGTATATATATGTACATATATACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTGTTCACATGTATCTATATGTATATATATGTACATATATACAT  748

seq1  ATATATACATATGTATATAATTGAATATATAATGACAAATCCAGATTTTT  799
      |||||||||||||||||||  ||||||||||||||||||| |||||||||
seq2  ATATATACATATGTATATA--TGAATATATAATGACAAATTCAGATTTTT  796

seq1  TTTAATTTTAAAAGTTAGTTTC-TGACCACCAATAATAGTAATTCTCTCT  848
      ||  ||||  |||||||||||| ||||  |  ||| |||||| |||||||
seq2  TT--ATTT--AAAGTTAGTTTCTTGAC--CTTATATTAGTAA-TCTCTCT  839

seq1  GTGGAGCAGGAGGGCCTAGGGTGGCTGGTGGGAATGGGAAACTGTTTTTG  898
      || |||||| |||  ||||    ||||||||||   |||||||| |||||
seq2  GT-GAGCAGAAGG--CTAG---TGCTGGTGGGA--TGGAAACTG-TTTTG  880

seq1  CAAGAGTT  906
      | ||||||
seq2  C-AGAGTT  887

seq1: chrY_1120573_1120771
seq2: B6Ng01-159K10.g_371_567

seq1  TTTTTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATT  50
      |||||||||||  |||||||| ||||||||||||||||||||| ||||||
seq2  TTTTTTTTTTT--TTTTTTTTCCCATTTTTTATTAGGTATTTAGCTCATT  48

seq1  TACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACT  100
      ||||||||||||||||||||||||||||||| || ||| |||||||||||
seq2  TACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCATCCACCCCCACT  98

seq1  CCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGG  150
      ||||| |||||||||||||||  |||||||||||  ||||||||||| ||
seq2  CCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGG  148

seq1  GGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  199
      |||| | ||||| |||  ||||||||||||||||||||||||||||| |
seq2  GGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGGC  197