BAC Information

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BAC

Clone NameB6Ng01-159M19
Chromosome4 (Build37)Y (Build37)
Map Location 143,395,938 - 143,397,0702,652,635 - 2,652,703
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009
Downstream geneOTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159M19.bB6Ng01-159M19.g
ACCDH953355DH953356
length1,132896
definitionDH953355|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M19, 5' end.DH953356|Mus musculus domesticus DNA, BAC clone: B6Ng01-159M19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(143,395,938 - 143,397,070)(2,652,635 - 2,652,703)
sequence
gaattctcctacctcagcctttttcctgcgaggacgacagtttagaataa
acccaccaggctgagttctatttgcctgtgtcccacataattctgagtgt
aaggcaagttggtgttactttatctttgatagtagggacatccacagcaa
acctcctggaaaacatcttcagagaaccttgtagaaacatcttgttgcaa
cagtgaaatctgttctgaaatatagaatacctaattgggagctctgtccg
tcatctgctatgttagtgactgaaaagtttgagacaggaggatggcttac
atctattaatactaggcaatggttctaaatatgtagcaaagaaggaagag
tttttcaaaaacaattataagctcaagggtcactttctccaaattggata
tgtttaaatatgcctgtcaacccagaaaagaactgaagtgagtagtagac
agtgataatttccatagagaacatcctcttctctgcaacctgctgtgagt
taactcagtaccttaaagaagctgcactacacatgaacgttggaagtccc
atgggaaggaactgtcagagggaactagatgacattattaggactatttc
tctgtctacaaagtgaagttcttcttaaccaacatataaacggttctgga
agtataagaattaagcaccttaaggtcacataatgtacttctcattttga
tatcaggtctctgagtattaaaatgttgcaattattgtcttccagcacag
gttaaatacagagatatagttcctgaagtgtgcctgtcttggtattcact
tggtctcattttctttattttttttaattaggtaatttcttcatttacct
ttccaatgctgtgccagaagcccccataccactcccactctcctaccctc
ccactcccacttcttggccctggcagtcccctgtactgaggcataaatag
tttgcagaccaatgggcctctctttccatgatggcaactaggccatcttt
ctgatacatatccagcttgaggacataagctccaagggaaatactggcta
ctccatattggtgttccacctataagggttaaggattctctttagctcct
gggtacttttctagctcctccctggggccctg
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacagccctgagat
tccacctcacacttgtgagaatggctaagtgttgggagccgcccccacat
tcgccgtcacaagatggcgctgacatcctgtgttctaagtggtaaacaaa
taatctgcgcatgtgccaagggtattttatgactacttgtactctgcctt
tcccgtgaacgtcagctcggccatgggctgcagccaatcagggagtgatg
cgtcctaggcgaaatataactctcctaaatagggaaggggtttcggtttg
attattggaggggctttcgtttttggggctgggcgctgggcgcttgccct
cctggctcccaaagatgtaagcaataaagttttgccgcagaagattttgg
tttgttgtgttcttcctcgtcgggcgcgtgagaacgctattaagaattgg
tgctgaaatccgggacgagaaaatacaagaaaactcgggaccggcgcaag
ggagatccctcattccagaaccagaactgcgggtcgcagtaataaaggtt
cccgtaaagcagactgtttagaaggattcaactgcatgaattcagaactt
ttcagctgggggaacagtgtaccagtgagtatagctttacgaggtaagtc
tggtcttgaactttctaaggaaattcaagacagtctatcagaagtaaagt
ggaaaatggcttttcaaggtatgtttggccttgaattttttctaatgtta
ggagcccttttgttccttttcacatgttatcaggtgattaagatagggct
gaaaattctggatgaaattcatggcaatctatcagaagtaaagcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143395938_143397070
seq2: B6Ng01-159M19.b_46_1177 (reverse)

seq1  CAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGAG-  49
      |||||||||  | |||||||||||| ||||||||| ||||||||||||| 
seq2  CAGGGCCCC--AGGGAGGAGCTAGA-AAAGTACCC-AGGAGCTAAAGAGA  46

seq1  ATCTGTAACCC-TATAGGTGGAACAACAATATGAAGTAGCCAGTATT--C  96
      |||  |||||| ||||||||||||| ||||||| |||||||||||||  |
seq2  ATCCTTAACCCTTATAGGTGGAACACCAATATGGAGTAGCCAGTATTTCC  96

seq1  CCTGGAGCTTATGT-CTCTAGCTGGATATGTATCAG-AAGATGGCCTAGT  144
      | |||||||||||| ||| ||||||||||||||||| |||||||||||||
seq2  CTTGGAGCTTATGTCCTCAAGCTGGATATGTATCAGAAAGATGGCCTAGT  146

seq1  TGGCCATCATTGGAAAGAGAGGCCCATTGGTCTTGCAAACTATTTATGCC  194
      | ||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  T-GCCATCA-TGGAAAGAGAGGCCCATTGGTC-TGCAAACTATTTATGCC  193

seq1  TCAGTACAGGGGACTGCCAGGGCCAAGAAGTGGGAGTGGGAGGGTAGGAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACAGGGGACTGCCAGGGCCAAGAAGTGGGAGTGGGAGGGTAGGAG  243

seq1  AGTGGGAGTGGTATGGGGGCTTCTGGCACAGCATTGGAAAGGTAAATGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGTGGTATGGGGGCTTCTGGCACAGCATTGGAAAGGTAAATGAA  293

seq1  GAAATTACCTAATTAAAAAAAATAAAGAAAATGAGACCAAGTGAATACCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACCTAATTAAAAAAAATAAAGAAAATGAGACCAAGTGAATACCA  343

seq1  AGACAGGCACACTTCAGGAACTATATCTCTGTATTTAACCTGTGCTGGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCACACTTCAGGAACTATATCTCTGTATTTAACCTGTGCTGGAA  393

seq1  GACAATAATTGCAACATTTTAATACTCAGAGACCTGATATCAAAATGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAATTGCAACATTTTAATACTCAGAGACCTGATATCAAAATGAGA  443

seq1  AGTACATTATGTGACCTTAAGGTGCTTAATTCTTATACTTCCAGAACCGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTATGTGACCTTAAGGTGCTTAATTCTTATACTTCCAGAACCGT  493

seq1  TTATATGTTGGTTAAGAAGAACTTCACTTTGTAGACAGAGAAATAGTCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTTGGTTAAGAAGAACTTCACTTTGTAGACAGAGAAATAGTCCT  543

seq1  AATAATGTCATCTAGTTCCCTCTGACAGTTCCTTCCCATGGGACTTCCAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTCATCTAGTTCCCTCTGACAGTTCCTTCCCATGGGACTTCCAA  593

seq1  CGTTCATGTGTAGTGCAGCTTCTTTAAGGTACTGAGTTAACTCACAGCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCATGTGTAGTGCAGCTTCTTTAAGGTACTGAGTTAACTCACAGCAG  643

seq1  GTTGCAGAGAAGAGGATGTTCTCTATGGAAATTATCACTGTCTACTACTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGAGAAGAGGATGTTCTCTATGGAAATTATCACTGTCTACTACTC  693

seq1  ACTTCAGTTCTTTTCTGGGTTGACAGGCATATTTAAACATATCCAATTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTTCTTTTCTGGGTTGACAGGCATATTTAAACATATCCAATTTG  743

seq1  GAGAAAGTGACCCTTGAGCTTATAATTGTTTTTGAAAAACTCTTCCTTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGACCCTTGAGCTTATAATTGTTTTTGAAAAACTCTTCCTTCT  793

seq1  TTGCTACATATTTAGAACCATTGCCTAGTATTAATAGATGTAAGCCATCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACATATTTAGAACCATTGCCTAGTATTAATAGATGTAAGCCATCC  843

seq1  TCCTGTCTCAAACTTTTCAGTCACTAACATAGCAGATGACGGACAGAGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCAAACTTTTCAGTCACTAACATAGCAGATGACGGACAGAGCT  893

seq1  CCCAATTAGGTATTCTATATTTCAGAACAGATTTCACTGTTGCAACAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTAGGTATTCTATATTTCAGAACAGATTTCACTGTTGCAACAAGA  943

seq1  TGTTTCTACAAGGTTCTCTGAAGATGTTTTCCAGGAGGTTTGCTGTGGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTACAAGGTTCTCTGAAGATGTTTTCCAGGAGGTTTGCTGTGGAT  993

seq1  GTCCCTACTATCAAAGATAAAGTAACACCAACTTGCCTTACACTCAGAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTACTATCAAAGATAAAGTAACACCAACTTGCCTTACACTCAGAAT  1043

seq1  TATGTGGGACACAGGCAAATAGAACTCAGCCTGGTGGGTTTATTCTAAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGACACAGGCAAATAGAACTCAGCCTGGTGGGTTTATTCTAAAC  1093

seq1  TGTCGTCCTCGCAGGAAAAAGGCTGAGGTAGGAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTCCTCGCAGGAAAAAGGCTGAGGTAGGAGAATTC  1132

seq1: chrY_2652635_2652703
seq2: B6Ng01-159M19.g_230_299

seq1  ACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAATAGTCTGC  50
      ||||||||||||||| |||| ||||||||| ||||||||||||| |||||
seq2  ACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGC  50

seq1  GCATGTG-CTGGGGTATTTT  69
      ||||||| |  |||||||||
seq2  GCATGTGCCAAGGGTATTTT  70