BAC Information

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BAC

Clone NameB6Ng01-162G21
ChromosomeY (Build37)
Map Location 1,120,587 - 1,121,061
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162G21.bB6Ng01-162G21.g
ACCDH955270DH955271
length9301,069
definitionDH955270|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G21, 5' end.DH955271|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccattttttttccaatttttattagg
tatttagctcatttacatttcaaatgttataccaaaagtccccatatcca
cccacccccactcccctgcccacccactccccctttttggccctggtgtt
cccctgtactggggcatataaagtttgcaagtccaatgggcctctctttc
cagtgatggccgactaggccatcttttgatatatatgcagctagagtcaa
gagctccggggtactggttagttcataatgttgttccacctatagggttg
cagatccctttagctccttggctactttctctagctcctccattgggagc
cctatgatccatccattagctgactgtgagcatccacttctgtgtttgct
aggccccggcatagctcacaagagacagctatatctgggtcctttcaata
aaatcttgctagtgtatgcaatggtgtcagcgtttggatgctgattatgg
ggtggatccctggatatggcagtctctacatggtgcatcctttcatctca
gctccaaactttgtctctgtaactccttccatgggtgttttgttcccaaa
tctaaggaggggcatagtgtccacacttcagtcttcattctccttgagtt
tcatgtgtttagcaaattatatcttatatcttgggtatcctaggtttggg
gctaatatccactgatcggtgagtacatattgtgtgagttcctttgtgaa
tgtgttacctcactcaggatgatgccctccaggtccatccatttgcctag
gaatttcataaattcattctttttaatagctgagtagtattccattgtgt
agatgtaccacattttctgtctccattcctctgttgaggggcatctgggt
tctttccagcttctggctattaataaataa
gaattctcacctgaggagtacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatactggcgaggatctggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatgaatacagaaaatgtggtacatttacacaatg
gagtattactcaacttttaaagagaataaatttatgaaattcataggcaa
atggatggacctggagggcatcatcctgaatgaagtaacccaatcacaaa
ggaactcacacaatatatactcattgataagtggatattagcctagaaac
ttaggatacccaagatataagatacaatttgctaaaatgcatgaaactca
agaataacgaagaccaaagagtggacacttttgccctcttcttagaaatt
gggaacaaaacacccatggaaggagttacagagacaaagttttggagctg
tgacgaaaaagatgaaccatctagagactgccatatccgggaatccatcc
cataatcagctttccaaacgctaaataccattgcacacactagcaagatt
tttgctgaaaggacccagatatagttgtctcttcctgaaactattgccgg
gggcctagcaaacacagaagtggaatctcccagttcagctattggatagg
tcacagggcccctcaatggatgagtctaggatatgttacctcaaggagct
aaagggatctgcaccctatttggtgggaactacattttgaactaaacaag
tacctcgggaacttttgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120587_1121061
seq2: B6Ng01-162G21.b_70_542

seq1  TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  50
      ||||||||||| ||||||||||||||||| |||||||||||||| |||| 
seq2  TTTTTTTTCCAATTTTTATTAGGTATTTAGCTCATTTACATTTCAAATGT  50

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATACCAAAAGT-CCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  99

seq1  CTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTT  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTT  149

seq1  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  199

seq1  TGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCAT  249

seq1  AACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACT  300
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACT  299

seq1  TTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTG  349

seq1  TGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGA  400
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAG-CTCACAAGAGA  398

seq1  CAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGT  450
      |||||| |||||  ||||||||||||||||||||||||||||||||||||
seq2  CAGCTATATCTGGGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGT  448

seq1  GTCAGCGTTTGGATGCTGATTATGG  475
      |||||||||||||||||||||||||
seq2  GTCAGCGTTTGGATGCTGATTATGG  473